GgaALTA0003835-2/3 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000007354 | CIT
Description
NA
Coordinates
chr15:9900307-9901441:+
Coord C1 exon
chr15:9900307-9900486
Coord A exon
chr15:9901138-9901140
Coord C2 exon
chr15:9901141-9901441
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CCATTATTTTTGAATGACAGCAG
3' ss Score
4.16
Exon sequences
Seq C1 exon
AACTCCTGCACGAGCCCACTTGGAGATACCAAATCCACGGTATCTAGGGCCTGCAATCTCATCTGGAGCTATCTACTTGGCCTCCTCCTACCAAGATAAATTAAGGGTGATCTGCTGTAAGGGCAATCTGGTGAAGGAGACCAACAATGAGCACCACAGAGGATCTTCTGCTACACGCAG
Seq A exon
CAG
Seq C2 exon
CCCTAACAAGAGAGGTCCGCCCACATACAACGAGCACATAACCAAGCGGGTAGCGTCGAGCCCAGGACCACCGGAAGGTCCCAGCCACCCTCGAGAACCAAGCACACCCCATCGGTACCGTGAGGGCAGGACAGAGCTGCGGAGGGACAAGTCACCTGGGCGACCACTGGAGAGGGAGAAATCTCCAGGCCGGCTTCTGAGCACCCGCAGAGAAAGGTCCCCTGGAAGACTGTTTGACGAAAGCAGCCGAGGACGGATGCCTGTGAGTGGTGCCAGAACTCCTCTTGCTCAAGTCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007354-58-62,58-61,58-60-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.328 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=PD(5.7=26.2)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCAATCTGGTGAAGGAGA
R:
ATGTGCTCGTTGTATGTGGGC
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]