HsaALTA0001885-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000122966 | CIT
Description
citron (rho-interacting, serine/threonine kinase 21) [Source:HGNC Symbol;Acc:1985]
Coordinates
chr12:120128206-120135643:-
Coord C1 exon
chr12:120135464-120135643
Coord A exon
chr12:120128257-120128259
Coord C2 exon
chr12:120128206-120128256
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
CGTTCCTCTTGTGTCGCCAGCAG
3' ss Score
5.99
Exon sequences
Seq C1 exon
GACCCCTGCCCGAGCGTACCTGGACATCCCGAACCCGCGCTACCTGGGCCCTGCCATTTCCTCAGGAGCGATTTACTTGGCGTCCTCATACCAGGATAAATTAAGGGTCATTTGCTGCAAGGGAAACCTCGTGAAGGAGTCCGGCACTGAACACCACCGGGGCCCGTCCACCTCCCGCAG
Seq A exon
CAG
Seq C2 exon
CCCCAACAAGCGAGGCCCACCCACGTACAACGAGCACATCACCAAGCGCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122966-53-55,53-54-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.311 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=PD(3.3=14.8)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGAGTCCGGCACTGAA
R:
GGTGATGTGCTCGTTGTACGT
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)