RnoALTA0009044-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000001143 | Cit
Description
citron rho-interacting serine/threonine kinase [Source:RGD Symbol;Acc:70878]
Coordinates
chr12:46336176-46342098:-
Coord C1 exon
chr12:46341919-46342098
Coord A exon
chr12:46336483-46336485
Coord C2 exon
chr12:46336176-46336482
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
TGATTCCTTATTGTCCCCAGCAG
3' ss Score
5.62
Exon sequences
Seq C1 exon
GACCCCTGCCCGAGCCTATCTGGAAATCCCAAACCCTCGCTACCTGGGCCCCGCAATTTCCTCCGGAGCAATTTACCTGGCCTCCTCATACCAGGACAAGTTAAGGGTCATATGCTGCAAAGGAAACCTCGTGAAGGAGTCTGGCACTGAGCAGCACCGCGTGCCCTCCACATCCCGCAG
Seq A exon
CAG
Seq C2 exon
CCCTAACAAGCGAGGCCCACCAACATACAACGAGCACATCACCAAACGTGTGGCCTCCAGCCCAGCACCACCAGAAGGCCCCAGCCATCCCCGAGAGCCAAGCACACCCCACCGCTACCGAGACAGAGAGGGCCGGACAGAGCTGCGCAGGGACAAGTCTCCAGGCCGTCCTCTGGAGCGGGAGAAGTCGCCAGGCCGGATGCTCAGCACGAGGAGAGAGCGGTCCCCGGGGAGACTGTTTGAAGACAGCAGCAGGGGCCGGCTGCCTGCGGGAGCCGTGAGGACCCCACTGTCCCAGGTTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001143-80-76,80-75-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.230 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=PD(5.4=24.6)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGCAAAGGAAACCTCGT
R:
TGCTCGTTGTATGTTGGTGGG
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]