HsaALTA0001885-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000122966 | CIT
Description
citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
Coordinates
chr12:119690401-119697838:-
Coord C1 exon
chr12:119697659-119697838
Coord A exon
chr12:119690452-119690481
Coord C2 exon
chr12:119690401-119690451
Length
30 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
CTGGGGTTGTGGCCTCGCAGCTC
3' ss Score
6.01
Exon sequences
Seq C1 exon
GACCCCTGCCCGAGCGTACCTGGACATCCCGAACCCGCGCTACCTGGGCCCTGCCATTTCCTCAGGAGCGATTTACTTGGCGTCCTCATACCAGGATAAATTAAGGGTCATTTGCTGCAAGGGAAACCTCGTGAAGGAGTCCGGCACTGAACACCACCGGGGCCCGTCCACCTCCCGCAG
Seq A exon
CTCCCTACGTTCCTCTTGTGTCGCCAGCAG
Seq C2 exon
CCCCAACAAGCGAGGCCCACCCACGTACAACGAGCACATCACCAAGCGCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122966-94-99,94-98,94-97-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.311 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=PD(3.3=14.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCATTTGCTGCAAGGGAA
R:
GGTGATGTGCTCGTTGTACGT
Band lengths:
119-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains