GgaALTA0004077-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000007841 | DNAH7
Description
NA
Coordinates
chr7:10720312-10721115:-
Coord C1 exon
chr7:10720984-10721115
Coord A exon
chr7:10720396-10720429
Coord C2 exon
chr7:10720312-10720395
Length
34 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
TGTTTCTTCTCCAACTGTAGGGT
3' ss Score
9.66
Exon sequences
Seq C1 exon
GAACTATCTCCTACTTCAGATACAAACTTAATTCAGTCTCTAATGAATCTGATGGACTGCATGATGGATGAATTTGCAGATGAAGCCAAAGTTAAAGCTATGAATGACCATGATATTTTTTCCTGGCTTGAG
Seq A exon
GGTATTTTTTTATTTTCACTGACATGGTCTGTAG
Seq C2 exon
GAGCTAGCTGTAAGGAAGATGATCGTCTGAAATTTGACAAAGTTGTTCGAGAAATGCTTAAAGGACCAATTAGTGAGGAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-21-22,21-21-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGATGGACTGCATGATGGA
R:
CAGACGATCATCTTCCTTACAGCT
Band lengths:
114-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]