HsaALTA1019784-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000118997 | DNAH7
Description
dynein axonemal heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr2:195884585-195886272:-
Coord C1 exon
chr2:195886141-195886272
Coord A exon
chr2:195884761-195884809
Coord C2 exon
chr2:195884585-195884760
Length
49 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TTCTCATCTGTCCAATGCAGGGC
3' ss Score
8.78
Exon sequences
Seq C1 exon
GAATTATCTCCTACTTCCGATACAAACTTGGTCCGGTCCTTAATGAATCTAATAGACTGTTTTATGGATGATTTTGCTGATGAAGTCAAACTAAAGGAGAGAAATGATCGAGAAACTTACTCTTTGCTTGAG
Seq A exon
GGCATTTTTCTGTTTTCATTGATCTGGTCCGTTGGTGCTTCTTGTACAG
Seq C2 exon
ATGATGATCGATTGAAATTTAATAAGATTCTTCGAGAACTAATGGAAAGTCCAATTTCAGATCGAACTCGAAATACGTTTAAATTACAGAGTGGTACTGAGCAAACATCCTCAAAGGCACTAACTGTCCCATTTCCTGAAAAAGGAACAATTTATGATTATCAATTTGTCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997-56-56,56-55-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.093
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGAAACTTACTCTTTGCTTGA
R:
AGTGCCTTTGAGGATGTTTGCT
Band lengths:
146-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains