GgaALTA0004077-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9229399-9230301:-
Coord C1 exon
chr7:9230170-9230301
Coord A exon
chr7:9229590-9229623
Coord C2 exon
chr7:9229399-9229589
Length
34 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
TGTTTCTTCTCCAACTGTAGGGT
3' ss Score
9.66
Exon sequences
Seq C1 exon
GAACTATCTCCTACTTCAGATACAAACTTAATTCAGTCTCTAATGAATCTGATGGACTGCATGATGGATGAATTTGCAGATGAAGCCAAAGTTAAAGCTATGAATGACCATGATATTTTTTCCTGGCTTGAG
Seq A exon
GGTATTTTTTTATTTTCACTGACATGGTCTGTAG
Seq C2 exon
GAGCTAGCTGTAAGGAAGATGATCGTCTGAAATTTGACAAAGTTGTTCGAGAAATGCTTAAAGGACCAATTAGTGAGGAGACAAGAGAGCAATATAAATTGTTGAGTAGTGTAGATCAACATGCTTCGAAGTCATTCACAGTGCCATTTCCAGCAGAAGGAACCATCTATGATTATCGGTTTGTCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-35-40,35-39-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGATGGACTGCATGATGGA
R:
CAGACGATCATCTTCCTTACAGCT
Band lengths:
114-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]