GgaALTA0004452-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000008461 | F1P302_CHICK
Description
NA
Coordinates
chr1:11461015-11465690:+
Coord C1 exon
chr1:11461015-11461132
Coord A exon
chr1:11465548-11465562
Coord C2 exon
chr1:11465563-11465690
Length
15 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GATTGTCATTTTAAAACTAGCTT
3' ss Score
2.95
Exon sequences
Seq C1 exon
TAGACTATGTCAGAAACTGTATAATTGGAAAAGGAGCTGAGTACAAAGGAACAATATCTATTACCAAGAGTGGTATTCAGTGTCAGGCCTGGAATTCCATGATCCCCCATGAGCACAG
Seq A exon
CTTTTTGCCTTCGAG
Seq C2 exon
CTATCGGGGTAAAGACCTGCGGGAAAACTACTGCCGAAACCCCCGAGGGGAAGAGGGAGGGCCATGGTGTTTCACCACCAGCCCACAGATGCGCCATGAAGTCTGTGACATCCCCCTCTGCTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008461-4-7,4-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(5.9=12.5),PF0005113=Kringle=PU(41.8=82.5)
A:
NA
C2:
PF0005113=Kringle=PD(54.1=90.9),PF034519=HELP=PD(66.7=40.9)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGATCCCCCATGAGCACAG
R:
ATCTGTGGGCTGGTGGTGAAA
Band lengths:
111-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]