MmuALTA0008576-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000028864 | Hgf
Description
hepatocyte growth factor [Source:MGI Symbol;Acc:MGI:96079]
Coordinates
chr5:16566747-16572634:+
Coord C1 exon
chr5:16566747-16566861
Coord A exon
chr5:16572492-16572506
Coord C2 exon
chr5:16572507-16572634
Length
15 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GATTATCATTTTAAAACTAGCTT
3' ss Score
2.65
Exon sequences
Seq C1 exon
ACTATATTAGAAACTGCATCATTGGTAAAGGAGGCAGCTATAAAGGGACGGTATCCATCACTAAGAGTGGCATCAAATGCCAGCCTTGGAATTCCATGATCCCCCATGAACACAG
Seq A exon
CTTTTTGCCTTCGAG
Seq C2 exon
CTATCGCGGTAAAGACCTACAGGAAAACTACTGTCGAAATCCTCGAGGGGAAGAAGGGGGACCCTGGTGTTTCACAAGCAATCCAGAGGTACGCTACGAAGTCTGTGACATTCCTCAGTGTTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028864-5-15,5-14-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(1.2=2.6),PF0005113=Kringle=PU(41.8=84.6)
A:
NA
C2:
PF0005113=Kringle=PD(54.1=90.9)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGATCCCCCATGAACACA
R:
TGCTTGTGAAACACCAGGGTC
Band lengths:
102-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types