HsaALTA0003983-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000019991 | HGF
Description
hepatocyte growth factor [Source:HGNC Symbol;Acc:HGNC:4893]
Coordinates
chr7:81752120-81757303:-
Coord C1 exon
chr7:81757189-81757303
Coord A exon
chr7:81752248-81752262
Coord C2 exon
chr7:81752120-81752247
Length
15 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GATTATCATTTTAAAACTAGCTT
3' ss Score
2.65
Exon sequences
Seq C1 exon
ACTACATTAGAAACTGCATCATTGGTAAAGGACGCAGCTACAAGGGAACAGTATCTATCACTAAGAGTGGCATCAAATGTCAGCCCTGGAGTTCCATGATACCACACGAACACAG
Seq A exon
CTTTTTGCCTTCGAG
Seq C2 exon
CTATCGGGGTAAAGACCTACAGGAAAACTACTGTCGAAATCCTCGAGGGGAAGAAGGGGGACCCTGGTGTTTCACAAGCAATCCAGAGGTACGCTACGAAGTCTGTGACATTCCTCAGTGTTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000019991-7-17,7-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(1.2=2.6),PF0005113=Kringle=PU(41.8=84.6)
A:
NA
C2:
PF0005113=Kringle=PD(54.1=90.9)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCAAATGTCAGCCCTGGA
R:
CCCTTCTTCCCCTCGAGGATT
Band lengths:
104-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains