GgaALTA0005884-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000011110 | DPP4
Description
NA
Coordinates
chr7:22727024-22729181:+
Coord C1 exon
chr7:22727024-22727184
Coord A exon
chr7:22729035-22729077
Coord C2 exon
chr7:22729078-22729181
Length
43 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
CAATCTTTTTTTTTCCCCAGGAA
3' ss Score
10.6
Exon sequences
Seq C1 exon
AGGAAATGTTTGGCAGCCATTCTGCTCTGTGGTGGTCTCCAAATGGCAATTTTGTGGCATACGCAGCATTTAATGACACAGAAGTTCCTGTTATAGAATATTCCTTTTATTCTGAAGACACCTTGCAGTATCCTAAGACCATTAGAATCCCATATCCCAAG
Seq A exon
GAATATTCTCTCTTTGAAATTACAATGAAACATTTTATTTTAG
Seq C2 exon
GCTGGAGCTAAAAATCCAACAGTGAAATTCTTCATTGTGGATATCCAAATGCTTCCTGATTTTAACAGTACTGAAATTTCTCCACCTGCAGAAATAAAATCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011110-9-15,9-14-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(14.4=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(9.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAATTTTGTGGCATACGCA
R:
CACTGTTGGATTTTTAGCTCCAGC
Band lengths:
141-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]