GgaALTA0005884-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000011110 | DPP4
Description
NA
Coordinates
chr7:22727024-22729181:+
Coord C1 exon
chr7:22727024-22727184
Coord A exon
NA
Coord C2 exon
chr7:22729078-22729181
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
AATGAAACATTTTATTTTAGGCT
3' ss Score
5.66
Exon sequences
Seq C1 exon
AGGAAATGTTTGGCAGCCATTCTGCTCTGTGGTGGTCTCCAAATGGCAATTTTGTGGCATACGCAGCATTTAATGACACAGAAGTTCCTGTTATAGAATATTCCTTTTATTCTGAAGACACCTTGCAGTATCCTAAGACCATTAGAATCCCATATCCCAAG
Seq A exon
NA
Seq C2 exon
GCTGGAGCTAAAAATCCAACAGTGAAATTCTTCATTGTGGATATCCAAATGCTTCCTGATTTTAACAGTACTGAAATTTCTCCACCTGCAGAAATAAAATCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011110-9-15,9-14-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(14.4=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(9.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAATTTTGTGGCATACGCA
R:
CACTGTTGGATTTTTAGCTCCAGC
Band lengths:
141-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]