HsaALTA1054223-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000197635 | DPP4
Description
dipeptidyl peptidase 4 [Source:HGNC Symbol;Acc:HGNC:3009]
Coordinates
chr2:162033541-162035324:-
Coord C1 exon
chr2:162035164-162035324
Coord A exon
chr2:162033650-162033653
Coord C2 exon
chr2:162033541-162033649
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
CTGTGATTATTTTTTCCTAGGCA
3' ss Score
7.99
Exon sequences
Seq C1 exon
AGGAAGTCTTCAGTGCCTACTCTGCTCTGTGGTGGTCTCCAAACGGCACTTTTTTAGCATATGCCCAATTTAACGACACAGAAGTCCCACTTATTGAATACTCCTTCTACTCTGATGAGTCACTGCAGTACCCAAAGACTGTACGGGTTCCATATCCAAAG
Seq A exon
GCAG
Seq C2 exon
GAGCTGTGAATCCAACTGTAAAGTTCTTTGTTGTAAATACAGACTCTCTCAGCTCAGTCACCAATGCAACTTCCATACAAATCACTGCTCCTGCTTCTATGTTGATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197635-21-19,21-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(14.2=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(9.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAAGACTGTACGGGTTCC
R:
TGCATTGGTGACTGAGCTGAG
Band lengths:
99-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains