RnoALTA0012660-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000030763 | Dpp4
Description
dipeptidylpeptidase 4 [Source:RGD Symbol;Acc:2515]
Coordinates
chr3:48333622-48335426:-
Coord C1 exon
chr3:48335266-48335426
Coord A exon
chr3:48333731-48333734
Coord C2 exon
chr3:48333622-48333730
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
TGTGGTTTTTTTTCCCCTAGGCA
3' ss Score
11.65
Exon sequences
Seq C1 exon
AGGAAATCTTCGGTGCCTACTCCGCACTGTGGTGGTCTCCAAACGGCACTTTTCTAGCTTATGCCCAGTTTAACGACACCGGAGTGCCTCTCATTGAATACTCCTTCTACTCTGATGAGTCACTGCAGTACCCCAAGACAGTGTGGATTCCGTACCCAAAG
Seq A exon
GCAG
Seq C2 exon
GAGCTGTGAATCCAACTGTAAAGTTCTTTATTGTAAATACAGACTCTCTCAGCTCAACTACTACTACGATTCCCATGCAAATCACCGCTCCTGCATCTGTGACAACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030763-12-13,12-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(14.1=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(9.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGATTCCGTACCCAAAG
R:
CGGTGATTTGCATGGGAATCG
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]