GgaINT0048340 @ galGal3
Intron Retention
Gene
ENSGALG00000011110 | DPP4
Description
NA
Coordinates
chr7:22727024-22729181:+
Coord C1 exon
chr7:22727024-22727184
Coord A exon
chr7:22727185-22729077
Coord C2 exon
chr7:22729078-22729181
Length
1893 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
AATGAAACATTTTATTTTAGGCT
3' ss Score
5.66
Exon sequences
Seq C1 exon
AGGAAATGTTTGGCAGCCATTCTGCTCTGTGGTGGTCTCCAAATGGCAATTTTGTGGCATACGCAGCATTTAATGACACAGAAGTTCCTGTTATAGAATATTCCTTTTATTCTGAAGACACCTTGCAGTATCCTAAGACCATTAGAATCCCATATCCCAAG
Seq A exon
GTCTGTGTTATTTATTTAACATGGTTGTTCTGCAGTTTCATTAAGGGAGTCTCATTTAATCCGTTTCTGCTAATGAAAATATTGTCTGTCTCTCCTCAACAGCTTGCTGTGATTACTCTTTCTGAAATCAACAGCATCTGGCAATGTTAAAGTATTTATTATCTCTAGGGGAAAGCAAAAAAAAAAAAAAAAAAAAAAGTTTTTCTTTTTCATCACAGAAGTTTTGAGAGGTGACAAGTAGATGTTGAGATAAAAAGAGCTCTTTAGTAAAAGCATTTGGCACACACACATTGTGTTAGGCTTGTGCACTGTACTGTGCTTGTGTAAATGGAATCTTCTTCAAACAATGGAGCAATTCTTAGTTGTTGGATGCTTCCTATGTTGGGAAGGGGAAGAAATCGCTGACATAATTTCTTCATCTACCCCTAAGCTTTACCAATTTTTGCTGCCACTGAAGACTTCAGTGCATGCAGATCTTCCCTCCACATGACTGCGTGCCCACTGCTCATGGCCCTGTTGGCACTAGGATAAATGGTGTGAATGTCAGAGTCCAGTGTGCTGCCAACAAGTTCTTTCAGGCATTCCATGTAGGGAGGATTAAATGTTTATTCCACAGTTTCCCTAGATTTAGCTATTGAAGTTATTTGATGTTACCTGGGATTTTGATTTAGTAGAGTGATACAGCAGTAGACTTAAGACGCAGTCCAAGTACAAATTACTCTTTGAGTACAACAATTGTACTGTATCTCTGAATCACAATATAAATGGAATTCTTATTACTGGTCTCTATAATAAGTTCATTGCTGGAATGCTGGTCATTCTCGTTTGCCTTGAAGTAATATGTAATCTGAAACCAGCTTAAGCCCATCTTTTTGTTCACTGTTTTGGTTTTTATATTCTGTGTTGTACAGATATGCATCTCCCCCCATGCTGGTCTGGCCAGCTCAGGAAGATGCGTGTATTCTTGATTAGCTGGGGCAGAACAACTGGTCAAGCCAGCTGACTGCAACTGACGAAGCTGCTTACCTGGAGTAAAAGTCAACCTCCAGTCCCCTTTGTGCTGAATTCAGCTTTCTTGGCAGCAGCTCTGCTACGTCACTCCCTACCCTTCCCTGATCTCCATGATCACATTGCCTTTTCCTGTCTCCTTGGAGGCTGTGGCACAGGGTCTCACTGGTGGTCACAGTGAGCAGCTGGGCTTGCTGCAGTAAGCTCAGGGACTGTGCCCTGAGTTTGCCACCAGTGAAGAGGCATAGGTGTAGCAGGTGTGGAGTGAACTGACAATTTAAATAGCACCTCTTATTACAAACCCTTCCTGTTTGGAGTATTGCTTATTTCTGGAGAGGGGTGAGCTACAGCTACTTAACTGTTACTATGAGGATTTAGCTAGCTAGCTTCAATTTTCAGAGAAGTCCTTTGTAACACAGTAATATTGCTGTTAGTACCTATCAGTGCTACGTTAAAAACAATGGGGTTCATGCTGCAGCCACAGTTTGATTACATTATAGGTAGCTGCTATACAGTCAGTTAAGGCAAGGTGTTAGTTTCCGTGAAGAATCACTATTCTTCCTGTTAGTATTGCACTTGATTCACTCCTAGATACTGTGTGGCCTTTGAGGCATCATATGGTCAAATGCTGCTGTGGGTAGAGCAAGACCTATGGATGTTTGAAATGTAGCCTTTCATACCTAGAATTACGTAGCTAACCCTTTTTTTAAAGGTAAATTATATATCAATCTTAAGAATTGCATTTAGGAACTTGTCTTCTCATGTGTCTGAAGGTAGCTGTTTCTACCTGACTGTCTGTAGTGATTTTTTCATCTATAATTTCAATCTTTTTTTTTCCCCAGGAATATTCTCTCTTTGAAATTACAATGAAACATTTTATTTTAG
Seq C2 exon
GCTGGAGCTAAAAATCCAACAGTGAAATTCTTCATTGTGGATATCCAAATGCTTCCTGATTTTAACAGTACTGAAATTTCTCCACCTGCAGAAATAAAATCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011110:ENSGALT00000018100:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(14.4=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(9.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAATGTTTGGCAGCCATTCT
R:
CCTGATTTTATTTCTGCAGGTGGA
Band lengths:
264-2157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]