HsaINT0051796 @ hg38
Intron Retention
Gene
ENSG00000197635 | DPP4
Description
dipeptidyl peptidase 4 [Source:HGNC Symbol;Acc:HGNC:3009]
Coordinates
chr2:162033541-162035324:-
Coord C1 exon
chr2:162035164-162035324
Coord A exon
chr2:162033654-162035163
Coord C2 exon
chr2:162033541-162033653
Length
1510 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
CTGTGATTATTTTTTCCTAGGCA
3' ss Score
7.99
Exon sequences
Seq C1 exon
AGGAAGTCTTCAGTGCCTACTCTGCTCTGTGGTGGTCTCCAAACGGCACTTTTTTAGCATATGCCCAATTTAACGACACAGAAGTCCCACTTATTGAATACTCCTTCTACTCTGATGAGTCACTGCAGTACCCAAAGACTGTACGGGTTCCATATCCAAAG
Seq A exon
GTCTGTGCTCCTGTTTGTACAGTGGTTCCATGATTTGATGGGAAGAGAATGGTTTCATTTAATCCCTTCTTGCTAATGAAAATATTGTCAGTCTCTCTTCAACAGCTTGCTGTGATTACTCTTGCTGAAGTCAACAGCATCTGGCAATTTTAAAGTATTTTTATTATCCCAGGAAAGAGTGTGATTTAAGGTTTTGTAATTTCTCCAAAAACTTTGAGGAATGACAAGCAGAAAAAATGGGGAAAATGCTTTAGAAAGAGATAAGGGGAATGAAAATGCTTGAATGGAGGAAAAGAGAGGCTATAATTGAATTAGAAGCTCGTCTCATTTGTAGAAGTTGGATTGTGCCCTCGACGAAGTTGCAAAGCTCAGTTATATATCAGATTGTATTACTAGTTAACGGGATACATGACTAGTTTTAGTGGTTCTATTATAGATTTGGCACTAATGTAAATTTTTCATGTCCTACATTTGGAATAATAGTGTCACGTCTTGGTTTTCAAAGCTGTTCTCCTCGTCAGGGTTGCGTGTTTACTAAAATTGAGGAGCTTTGTTAAGCAGCGTAAGCCGGGTGAGATGGGGTTTAGAAGGGAACCAGGAATTCTTCACTAGTACCGTAATAATAATGGCTACAGTATTGTCTGCAGGAGAATCTAATAGTAAAGTGTTTTTTCTGTAAGAAATTTGGAAAAGGGGATTTTTATTTTTACCAACTCACTCAATTTGCTTTATGAAGAGCTGCCATTTTAGGAAGACAGAGGAAGTTAAAAGAAAAAAAAAGATCAGAGACTAAATATGGAGATGTGTTTTCAGTGGAATGTTATTTTTTGATGAGCGAAACTGGCACATACAAAAAAAACTCCATAAAGTGTTCTCACTAAAAATATCATATTATTTCTAACTAATCTGTCAATCGAAGATCTATGTGTATATTTAAAAAGGTTTTATAGGTTTCAGTCATAATATTGATTGTAAAGCTCCAACATAGTGAACCTGAATTTAGAGTGGAAATGATGGCTTCCTAATTGACACCGTTGACTCAGGTAAACTGATTTTTCTGGTGGATGGTGTCTTTGGCAGAACCCAAGGTGTTCTTCATACTGACAGGCATCAAAGACTTTTGGTCTCAGGGAGACAGGGTATATTTGCAAATAATAAAGTTGATTTTAAGAGGTTTATCCTTGCTTGCACAAAGTGATAAATTATAAAGATATAAACATTCATTATTTAAACAGAAGTGCTTTGGACCTTCAAGTTTTATATAGTGTGTATATATATATATATATATATATATATATATACACATATTCTGTTTCTGCCTGACCATGAAAAGGTTGCATTTCATGACTCTCCCTTATGTTCATTTTATGTATATTAAATTGTTGGAACATGTCTGATTGTGATAATTTTATGACCATAATGCAGACGTTTTTGTGCAGTTTTAAAATGTGTGCAACGATGTTACTTTTTTTTTTTTGTCAATACCAATTCTGTGATTATTTTTTCCTAG
Seq C2 exon
GCAGGAGCTGTGAATCCAACTGTAAAGTTCTTTGTTGTAAATACAGACTCTCTCAGCTCAGTCACCAATGCAACTTCCATACAAATCACTGCTCCTGCTTCTATGTTGATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197635:ENST00000360534:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(14.2=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(9.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGTCTTCAGTGCCTACTCT
R:
TCAACATAGAAGCAGGAGCAGTG
Band lengths:
270-1780
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development