HsaINT0051796 @ hg19
Intron Retention
Gene
ENSG00000197635 | DPP4
Description
dipeptidyl-peptidase 4 [Source:HGNC Symbol;Acc:3009]
Coordinates
chr2:162890051-162891834:-
Coord C1 exon
chr2:162891674-162891834
Coord A exon
chr2:162890164-162891673
Coord C2 exon
chr2:162890051-162890163
Length
1510 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
CTGTGATTATTTTTTCCTAGGCA
3' ss Score
7.99
Exon sequences
Seq C1 exon
AGGAAGTCTTCAGTGCCTACTCTGCTCTGTGGTGGTCTCCAAACGGCACTTTTTTAGCATATGCCCAATTTAACGACACAGAAGTCCCACTTATTGAATACTCCTTCTACTCTGATGAGTCACTGCAGTACCCAAAGACTGTACGGGTTCCATATCCAAAG
Seq A exon
GTCTGTGCTCCTGTTTGTACAGTGGTTCCATGATTTGATGGGAAGAGAATGGTTTCATTTAATCCCTTCTTGCTAATGAAAATATTGTCAGTCTCTCTTCAACAGCTTGCTGTGATTACTCTTGCTGAAGTCAACAGCATCTGGCAATTTTAAAGTATTTTTATTATCCCAGGAAAGAGTGTGATTTAAGGTTTTGTAATTTCTCCAAAAACTTTGAGGAATGACAAGCAGAAAAAATGGGGAAAATGCTTTAGAAAGAGATAAGGGGAATGAAAATGCTTGAATGGAGGAAAAGAGAGGCTATAATTGAATTAGAAGCTCGTCTCATTTGTAGAAGTTGGATTGTGCCCTCGACGAAGTTGCAAAGCTCAGTTATATATCAGATTGTATTACTAGTTAACGGGATACATGACTAGTTTTAGTGGTTCTATTATAGATTTGGCACTAATGTAAATTTTTCATGTCCTACATTTGGAATAATAGTGTCACGTCTTGGTTTTCAAAGCTGTTCTCCTCGTCAGGGTTGCGTGTTTACTAAAATTGAGGAGCTTTGTTAAGCAGCGTAAGCCGGGTGAGATGGGGTTTAGAAGGGAACCAGGAATTCTTCACTAGTACCGTAATAATAATGGCTACAGTATTGTCTGCAGGAGAATCTAATAGTAAAGTGTTTTTTCTGTAAGAAATTTGGAAAAGGGGATTTTTATTTTTACCAACTCACTCAATTTGCTTTATGAAGAGCTGCCATTTTAGGAAGACAGAGGAAGTTAAAAGAAAAAAAAAGATCAGAGACTAAATATGGAGATGTGTTTTCAGTGGAATGTTATTTTTTGATGAGCGAAACTGGCACATACAAAAAAAACTCCATAAAGTGTTCTCACTAAAAATATCATATTATTTCTAACTAATCTGTCAATCGAAGATCTATGTGTATATTTAAAAAGGTTTTATAGGTTTCAGTCATAATATTGATTGTAAAGCTCCAACATAGTGAACCTGAATTTAGAGTGGAAATGATGGCTTCCTAATTGACACCGTTGACTCAGGTAAACTGATTTTTCTGGTGGATGGTGTCTTTGGCAGAACCCAAGGTGTTCTTCATACTGACAGGCATCAAAGACTTTTGGTCTCAGGGAGACAGGGTATATTTGCAAATAATAAAGTTGATTTTAAGAGGTTTATCCTTGCTTGCACAAAGTGATAAATTATAAAGATATAAACATTCATTATTTAAACAGAAGTGCTTTGGACCTTCAAGTTTTATATAGTGTGTATATATATATATATATATATATATATATATACACATATTCTGTTTCTGCCTGACCATGAAAAGGTTGCATTTCATGACTCTCCCTTATGTTCATTTTATGTATATTAAATTGTTGGAACATGTCTGATTGTGATAATTTTATGACCATAATGCAGACGTTTTTGTGCAGTTTTAAAATGTGTGCAACGATGTTACTTTTTTTTTTTTGTCAATACCAATTCTGTGATTATTTTTTCCTAG
Seq C2 exon
GCAGGAGCTGTGAATCCAACTGTAAAGTTCTTTGTTGTAAATACAGACTCTCTCAGCTCAGTCACCAATGCAACTTCCATACAAATCACTGCTCCTGCTTCTATGTTGATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197635-DPP4:NM_001935:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(14.2=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(9.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGTCTTCAGTGCCTACTCT
R:
TCAACATAGAAGCAGGAGCAGTG
Band lengths:
270-1780
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)