MmuINT0052934 @ mm10
Intron Retention
Gene
ENSMUSG00000035000 | Dpp4
Description
dipeptidylpeptidase 4 [Source:MGI Symbol;Acc:MGI:94919]
Coordinates
chr2:62372755-62374526:-
Coord C1 exon
chr2:62374366-62374526
Coord A exon
chr2:62372868-62374365
Coord C2 exon
chr2:62372755-62372867
Length
1498 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTCT
5' ss Score
0.9
3' ss Seq
TGGTTTTTCCCCCCCCCTAGGCA
3' ss Score
10.95
Exon sequences
Seq C1 exon
AGGAAGTCTTCGGTGCCTACTCTGCACTGTGGTGGTCTCCAAACAACACGTTTCTAGCTTATGCCCAGTTTAACGACACAGGAGTGCCGCTCATTGAATACTCCTTCTATTCTGATGAGTCACTGCAGTACCCCAAGACAGTGTGGATTCCATACCCAAAG
Seq A exon
GTCTCTGCTCCCGCTCAGATCTTGGTTCTGCAATTTGATGGGGGGGGGGGGGGGAGAGAATGGTTGCATTTAATCCCTTCCTGCTAATGAAAATATTGTCAGTCTCTCTTCAACAGCTTTCTCTGATTTCTCTTGCTGAAGTCAACAGCATCTGGGCAATTTTAAAGTATTTTTATTATCCCAGGAAAGAGTGTGATTTAAGGTTTTGTAATTTCTCCAAAACCTCTAAGAAATGACAAGCAGAAAAAGATGGTGAAAATGATTTTGAAAGAGGTAGGGGCGGGGTAGGAAATGCTTGAATGAAGGCAAAGGGAGGCTGTAATTGAATCAGGAGCTCATCTCATTTGTAGACGTTGGAATGAGCCCGAATTTGAAGTTGAAAAGCCTGGTTATATATCAGATTGTATTACTAATTAACAGGATACAGTGCATGACGAGTTTCAGTGGCTCTGTTACAGGTTTGGCACTGACGTGAGTTTTGCACGTCCTACATTTGAGACAGTCGTGCCGCATCCTGGGTTTCAAGATTGTTCCCTGCTATCCACACTGTGTGTATTAAAATCAAGGATCTTTGTCAAGCAGTATAAGCCAGGAGAGGGCTTTAGAAGGGAGCCAGGAATTCTTCAGCACCATAACAAAAACGGCCACAGTGTCGTCGTCTACAGGAAAAGCTAACAACGTATTTCTGCCGTAAATGATTTGGAAAAAAAAGGAGTTTTTATTTTTACCAACTCACTTAATTTGCCTTATGAAGATCTGCCATTTTAGGAAGGGAGAGGAAGTTAAAAGGAAAAAAGATCCTAAATTAAATATGGAGATATGTTTTCAGAGAATGTTATTTTTTGATGAGTGAAACTGAGGGGGAAAAATCTCCATAAAACAATCTCTAAAACTCATATTATTTCTAACTAATCTGTCAATAGAAGATGCATGTGTACATTTTTAAAGCGCTTAGAGACTTCTGCAGTAATATTGACTGTTGAGCCCCAGCATGGTTAGCCTGAACTTGACATGAAGGTGACACCTACTACATCAGCACGATTGGCTCTGGCCTCAGGCTTATTTTCCTGGTGGACCAAGCCTTTGATACTATACAAGTGAACCACCAAAATGTTTGTGCTATAGAATTTGAATATATTGGCAAATGATGGAGTTGCTTTTTTAAAAAAAAGACATTTGTCTCCCCACCCCCACTCCCGGCACAAAGCACACAGATTCTGAGCAAGCAAACACGCGTGATTTAAATATGAGTGTTTGGACCTTCATGTTTTATAAACACACACAGGCACACAGACATGCACACACAATTTTTTTAACCTGAACACATAAAGGATTTTCTTTATGTTCATTTTATTTCTATTAAATTGTTTGATGGTATCCTATTGTTATGATTCTACAGCCATAATTCAGATAGTTTAATGCAGCTTAAATTTATGTAATGATGAGGCTGTTTTTTTTTTTAATCATTATCAATTCTGTGGTTTTTCCCCCCCCCTAG
Seq C2 exon
GCAGGAGCTGTGAATCCAACTGTAAAGTTCTTTATTGTAAATATAGACTCTCTCAGCTCATCCTCTAGTGCGGCTCCCATCCAAATCCCTGCTCCTGCATCTGTGGCAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035000:ENSMUST00000047812:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(14.2=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(9.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGTCTTCGGTGCCTACT
R:
CTCTTGCCACAGATGCAGGAG
Band lengths:
273-1771
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types