RnoINT0050844 @ rn6
Intron Retention
Gene
ENSRNOG00000030763 | Dpp4
Description
dipeptidylpeptidase 4 [Source:RGD Symbol;Acc:2515]
Coordinates
chr3:48333622-48335426:-
Coord C1 exon
chr3:48335266-48335426
Coord A exon
chr3:48333735-48335265
Coord C2 exon
chr3:48333622-48333734
Length
1531 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
TGTGGTTTTTTTTCCCCTAGGCA
3' ss Score
11.65
Exon sequences
Seq C1 exon
AGGAAATCTTCGGTGCCTACTCCGCACTGTGGTGGTCTCCAAACGGCACTTTTCTAGCTTATGCCCAGTTTAACGACACCGGAGTGCCTCTCATTGAATACTCCTTCTACTCTGATGAGTCACTGCAGTACCCCAAGACAGTGTGGATTCCGTACCCAAAG
Seq A exon
GTCTGTGCTCCCCGCTCACATCATGGCTCTGCGATTTGATGAGGGGAGAGAATGGTTGCATTTAATCCCTTCCTGCTAATGAAAATATTGTCAGTCTCTCTTCAACAGCTTTCTGTGATTTCTCTTGCTGAAGTCAACAGCATCTGGGCAATTTTAAAGTATTTTTATTATCCCAGGAAAGAGTGTGATTTAAGGTTTTGTAATTTCTCCAAAAACTCTAAGAAATGACAGGCAGAAAAAGATGGTGAAAATGGTTTTGAAAGAGGTAGGGGAGGGGTAGGAAATGCTTGAATGAAGGGAAAGGGAGGGCTGTAATTGAATCAGGAGCTCATCTCATTTGTGGAAGTTGGAATGAGCCCGAATTGAAGTTGAAAAGCCTGGTTATATATCAGATTGTATTACTAATTAACAGGATACAGTGCATGACGAGTTTCAGTGGCTCTGTTACAGGTTTGGCACTGACGTGAGTTTTGCACGTCCTACATGTGAGATAGTCGTGTCGCATCCTGGGTTTCAAGATTGTTCCCTGCTATCCACGCTGTGTGTATTAAAATCAAGGATCCTTGTCAAGCAGTTTAAGCCAGGAGAGGGCTTTAGGAGGGAGCCAGGAATTCTTCAGCACCATAACAAAAACGGCCACAGCGTCTTCGTCGTCTACAGGAAAAGCTAACAACGTATTTCTGCCATAAATGATTTGGAAAAAAAAAAGGAGTTTTTATTTTTACCAACTCACTTAATTTGCCTTATGAAGATCTGCCATTTTAGGAAGGGAGAGGAAGTTAAAAGGAAAAAAGATCCTAAATTAAATATGGAGATGTGTTTCCAGAGAATGTTATTTTTTGATGAGTGGAACTGAGTAGGGGGGAAGCTCCATAAATCAGTCTCTAAAAATCATATTATTTCTGACTAATCTGTCAATGGAAGACCCATGTGTACACTTTTAAAGGGCTTAGAGACTTCTGTTATAATATTGACCGTTGAGCCCCACCACGGTTAACCTAGACTGTAAGTGAAGGCGGCACCCACTTCATCAGCACGACTGCCTCTGGCCTCAGGCTTCTTTTCACAATGGACCAAGCCTTTGATGTTATACAAGTGATATTCTTAGTGGAGCTACCAAAAACTGCTCTACTATACAGTCAGGATATATTGGCAAATGACAGAATTGCTTTTGTAAAAAGACATTTGTCCTCCCTGGCACAAAGCACACAGATTATGAGCAAGCAAACATCATGATTTTAACTGTGAGTGTTTGGACCTTCATGTTTGATAAACACACACATGCACACATGCACACATGCACACATGCACACATGCACACATGCACTCACACCCGAATATTTTTTTACCTGAACACATGACGGATTTCCTTTGTGTTCATTTTATTTCTATTAGATTGTTTGACAGTGTCCAATTGTTGTAATTCTATAGCCATAATTCAGATATTTTAATGAAGTTTAAATTTATGTAATGATGAGGCTGTTTTATTTTAAAAGAATCATTATCAATTCTGTGGTTTTTTTTCCCCTAG
Seq C2 exon
GCAGGAGCTGTGAATCCAACTGTAAAGTTCTTTATTGTAAATACAGACTCTCTCAGCTCAACTACTACTACGATTCCCATGCAAATCACCGCTCCTGCATCTGTGACAACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030763:ENSRNOT00000040482:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(14.1=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(9.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAATCTTCGGTGCCTACTCC
R:
TGTTGTCACAGATGCAGGAGC
Band lengths:
271-1802
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]