GgaALTA0007356-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000014632 | Q5ZJ82_CHICK
Description
NA
Coordinates
chr25:1645975-1647992:+
Coord C1 exon
chr25:1645975-1646209
Coord A exon
NA
Coord C2 exon
chr25:1647899-1647992
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CTGTCTGCCTGGGCCAGCAGCGG
3' ss Score
2.96
Exon sequences
Seq C1 exon
CTACGACGACCACTCAGCAGACAGGAGGGCCTACGACCGCCGTTACTGTGACAGCTACCGGCGCAACGATTACAGCCGTGAGCGAGGAGAGCCCTACTACGACCCCGAGTACCGGCATTCCTACGAGTACCGGCGCTCCCGGGACCGCGACGGCAGCTACCGGAGCTGCAAAAGCAGCCGGCGTAAGCACAGGCGGAGGCGGCGGCGCAGCCGGTCCTTTAGTCGCTCCTCATCG
Seq A exon
NA
Seq C2 exon
CGGAGTCGACAGAGCAGCAGAAGGGCCAAGAGTGTGGAGGACGACGACGAGGGGCATCTGATCTATCGCGTCGGCGACTGGCTACAAGAAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014632-1-3,1-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.835 A=NA C2=0.406
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCCTTTAGTCGCTCCTCA
R:
CGACGCGATAGATCAGATGCC
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]