BtaALTA0007369-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000014393 | CLK2
Description
CDC-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:2069]
Coordinates
chr3:15425452-15426422:+
Coord C1 exon
chr3:15425452-15425680
Coord A exon
chr3:15426338-15426342
Coord C2 exon
chr3:15426343-15426422
Length
5 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CCCCCGCCCCCCGACAGCAGCAC
3' ss Score
3.01
Exon sequences
Seq C1 exon
CAGCTATGATGATCGTTCATCCGATCGGAGGGCGTATGACCGGCGATACTGTGGCAGCTACAGGCGCAACGACTACAGCCGAGATCGGGGAGAAGCCTACTATGACACAGACTACCGGCATTCCTATGAGTACCATCGGGAGAACAGCAGTTACCGCAGCCAGCGCAGCAGCCGTAGGAAGCACCGACGGCGGAGACGGCGCAGCCGGACATTCAGCCGTTCGTCTTCG
Seq A exon
CACAG
Seq C2 exon
CAGCCGGAGAGCCAAGAGTGTAGAGGACGACGCTGAGGGCCACCTCATCTACCACGTCGGGGACTGGCTACAAGAGCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014393-8-8,8-7,8-6-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=NA C2=0.568
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACATTCAGCCGTTCGTCTT
R:
CTCTTGTAGCCAGTCCCCGA
Band lengths:
99-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development