BtaINT0039387 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014393 | CLK2
Description
CDC-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:2069]
Coordinates
chr3:15425452-15426422:+
Coord C1 exon
chr3:15425452-15425680
Coord A exon
chr3:15425681-15426334
Coord C2 exon
chr3:15426335-15426422
Length
654 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CCCCCCCCGCCCCCCGACAGCAG
3' ss Score
6.97
Exon sequences
Seq C1 exon
CAGCTATGATGATCGTTCATCCGATCGGAGGGCGTATGACCGGCGATACTGTGGCAGCTACAGGCGCAACGACTACAGCCGAGATCGGGGAGAAGCCTACTATGACACAGACTACCGGCATTCCTATGAGTACCATCGGGAGAACAGCAGTTACCGCAGCCAGCGCAGCAGCCGTAGGAAGCACCGACGGCGGAGACGGCGCAGCCGGACATTCAGCCGTTCGTCTTCG
Seq A exon
GTGAGTGCTAGCCCAGGCCCTTCCTCTCCCCACTCTTCTTCAGCCCTCTGGGACCCCGGTAAGTGAGGAACATTGGGGCATGAACACTGAGGTGCTCGCTTGGAAGCTCTCCAGCTCTTGGAGGGCCCTGAATCTGCTTCGGAGGTGAATGGGCACAGAGCATTTGTGAATCCCCGTGCCCTCCCTGGCATGCTGGGCTTATTGTGTTGGGAGCAGCTCTTCCACCCCCGAGAGGCCTCCATTTTCTAATGGGGACCTTGCTTTTGAACAGCCTTTTTCCCCCAAGCCCTGGACTCTGGCCCCCTCAGCAGGTGGGCTTGGGTGGGAGCAAGGGGAGACCTGTGCCTGCCTGGAAGGGCACCGTGTAGAGCATGGGGTTGTGGGTGACATTGGCAACAACACCACTTCTCCGCTCTGCCCGTGCCTCTCCCCGTTCCCATTTTGGGTTTGGGGACTTGGGATTGCGCGCCGCTCTCTCTTCTCACCCCGATCCGCCTTACTGCATCTGACGTGTTCCCTTCCACTGTCCCCCATCATTGTCTGTCCCCCCTGGCTGGGCGCCTGTGACCGGTGACCCCTCCACCACCCACCCCGCCTCCCTCCGGCCCCCGCTCCGACACCTGGCTTGCTCCGACCCCCCCCGCCCCCCGACAG
Seq C2 exon
CAGCACAGCAGCCGGAGAGCCAAGAGTGTAGAGGACGACGCTGAGGGCCACCTCATCTACCACGTCGGGGACTGGCTACAAGAGCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014393:ENSBTAT00000019139:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=NA C2=0.568
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGATCGGAGGGCGTATG
R:
CTCTTGTAGCCAGTCCCCGA
Band lengths:
294-948
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]