RnoINT0037394 @ rn6
Intron Retention
Gene
ENSRNOG00000030126 | Clk3
Description
CDC-like kinase 3 [Source:RGD Symbol;Acc:621259]
Coordinates
chr8:62535609-62538117:-
Coord C1 exon
chr8:62537901-62538117
Coord A exon
chr8:62535706-62537900
Coord C2 exon
chr8:62535609-62535705
Length
2195 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
TCGGGGGGCGGTGCATGCAGAGA
3' ss Score
-0.12
Exon sequences
Seq C1 exon
CCATGATCGTATACCCTACCAGAGGAGGTACCGGGAACACCGAGACAGCGATACATATCGGTGTGAAGAGCGGAGCCCATCCTTTGGAGAGGACTGCTATGGGTCTTCACGTTCTCGACATCGGAGACGGTCACGAGAGAGGGGGCCGTACCGTACCCGCAAGCATGCCCACCACTGTCACAAACGTCGTACCAGGTCTTGTAGCAGCGCCTCCTCG
Seq A exon
GTGAGTGGTGGCCAAAGTGTGCTAATAGGGGCCTAAAGGCCTCACCTCTTTCTCGCCTTTTCTCAGGCTAGCTGGTCTGGGTGAGTACTGGCAACCCCGCGTACATACACCATTGTGGATACACACAAGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTATGGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGTGTGTTTGGTATAGGACTGAGTGAGGATGTTATGCCTTCCATCTTCTGGCCTCTTGCCAATGGCAACTATAGAGGCTCTGGCTCCGGCGTTGGCTGATTTCCAGCCTGTCTGTGTCTACCCACTGTTCTAGACTCAGGCTACATGGTGCACATGATTGGGACACACTTCTCAGGGCTGGTACTAAGATTGTTGGTTTGTGGTTTGGGTCTATATGTCCCAGTATTTTTCATATCAGGTCTTGTCCCTATCAGGCCTGCCCCATAGCTATGCTTTGAGGAGTGTGGACTTGACCACCTCTGCAGCTCATCTCCACAGCCTTCCTCTCCCAGAGGACCAGAGTCTGCATTACCCAATAAAAAAGGGACACTTTACCAGTCAATTTTATTTTTCTTTTTTAAATGCTGGAGTCCAACCCAGGGTCCACACATAATACTAGGCAGGTACTCTACTGCTGAACTGTATCACACCCCATTCCCCACACCTCCTCTTTGTTTTTGAAAGTTTTATGTATTCCATGCTGGCCTAAAACTCATGATCCTTTTCTCTCTACTTCCTGAGTGCTAGGCACCGCTGCCTGGCTTCCTAGCCCTTTCTTTTTTAGATATGGGTCTTGAATTTCTGTGTTTACCTTTCCAAGTTGCTGGTCTGTAAGAGCACATCACTTTGCCCTGTCAAGTCAGCTCACATTGGAGCTTCTCATCTGACCTCCAGCCAGGGTCTCTTCTACCTTGTTCCTTTGTAGGTGGGTTACTTCTGGTAAGGAGCGACAGCTGGCTGTGTGATGAGGTCCCAGGCCTCACCTTGTTGCAGGCCACTTAAAGAACAGAGGTTGGCCATCATTCTTGGTGGTGTGTTGAACAGACCAAGAGCCCACACGGTATTCAATCCCGTGGAAAAGGAAAGTCACTTGTGTTTCCAAGGTCATGTGCTGTCTTCTCTTCTTCTCGTGTGTTCTTCCTGTGTTGTCCTCCTGCGGGCCAAGAGGCCTCTTAGTAGTGGTGGGTTTGGTGGAGGTATCTTTTCTACCCAGCGCTGTGACTTGAGTGGTGTGAGTTGAAGGTTGACTTGCAGGTGAATTAAGCATGGGCCTCACACAGTGCCATATGCTGCCACTGGATGGCAGTGCAAGTCTGGTGCTCTGCTTATTTTTGGTGCCCTCTGTCGTTGTGGGAAGGGTCTGACTTATGAGTGGCACAAGTGCTAAGGCCAGGTCAGGAGCTGGCGTGGGACCTGAAGGTCAGCTGGCCCAAAGGACCTCAGCCAGGCTCATTTCCTGCTGGAGTCTGGTGGCAGGAGGGCTGTTGGCAGAGTTCTGTTTCTGGTAGTTGGTTACATCTGGCTAAGGATGTCATGTGGGGGCAGGTAGTAGCTTGGTTCTGTGTGGCAGCTGTTGAACATGTTGTAAGGCCATGTGGGCTAGCATAGGCAGGCAAAGAAAGGCTGACCATACTGTTGCTGCTGAAGCCAGGATAGCCCCAACCGATCTAGAAGGTTGGACTCAGGTTGGGCCAGCTGCCTTTTTTTGCGCCGTCTTCAGCTCTGGCCAGAGTCATGGGAGGGTCAGGGAGGGGGAGACTTAGAAGAGGAGGGAGTCAGGGCTATGGCTGTACTTGGGGCCTGGCCCCTCTGTCAGAGGCTGGACATCTTTCTGAGCATTTGTGGCACTCTTCTTAGAGATAATGTCCGAGTTTTCTTACATACCTGTAGCTGTTTTTGCTTTTCTGTTTTGAAGTCAGTTTGTGTCTTGACGTGTCCCTTGCAATATCCCTATCGTTATATATGCTGTGTGCCTTATGAAATGCTGGGATCTGGAAAATCCAACCAACCAACCCACCGGCTCCTCACCGTCTCCACCTCTGCCTTTGACTGACACCTCAATCTGTCAATCGGAACCGCCTACCATGCGATTGGTCGGATGGCGTTTCGGGGGGCGGTGCATGCAG
Seq C2 exon
AGAAGCCAACAGAGCAGTAAGCGCAGCAGCCGGAGTGTGGAAGATGACAAGGAGGGCCACCTGGTGTGCCGGATCGGCGATTGGCTCCAAGAGCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030126:ENSRNOT00000068108:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.808 A=NA C2=0.424
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]