GgaINT0030403 @ galGal4
Intron Retention
Gene
ENSGALG00000001362 | CLK3
Description
dual specificity protein kinase CLK3 [Source:RefSeq peptide;Acc:NP_001012542]
Coordinates
chr10:1978398-1980818:-
Coord C1 exon
chr10:1980605-1980818
Coord A exon
chr10:1978492-1980604
Coord C2 exon
chr10:1978398-1978491
Length
2113 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
GCGGGGGGCGGTGCGTACAGAGA
3' ss Score
-1.57
Exon sequences
Seq C1 exon
CCATGACAGGATGCCTTATCACAGGAGATACAGAGACCGACGGGACAGCGACGCCTACAGATTCGAAGAGCGGAGCCCGTCCTTCGACGACGACTATTACTCGACCCGCACGCGGCACTGGCGGCGATCCCGGGACAGAGAGCAGTACTATGACAGGAAGCACCAGCACTACTGCAGGAAACGCAGGACCAGGTCTTGTAGCAGTGCCTCCTCG
Seq A exon
GTGAGTAGCATCCAGAACGAGCTGGGGATTGGTCAGGCGTTAACCATTCTTACCTCCTTCTAGCTCTTGAACGCTCTGGGTGAGTACCTCTAATCCCGTTTTTGTGTTTGTTTGGATTACGTGCGGTCTTTGGTCCCCAGAATGTGTCTTGTTAAGCGAGGAGCGTTCGTAGCTCTCAGTGTTTCCTAGCCCAGCCCCTGTAGCTTTAATACGTGAGGAAACTAAGCTGTGCGCTCCGTGGCCAGGGGAGGGGAGGATGAGTGAAGGCTTCAAATGGCGCACACGTGATGCTTTAACAGACGAGCCCTGGCTCCAGGCCAGCTGGGCTGCTGGTTGTGTGGGTTTACACGCAGCAGGGCCCTCGCTTCTGCGTATCCACGCTTCTTTGAGGGGATTTGGTGTGCAGCGGTGGTACGGGGCGCTCCGTGAGGGCATGTTGGTTTGGGTTTGTGCCAGCATCCCGCACCGAATGGGGTCAGCCAGCTGTATCGAGCCTTGTTCTTCTGAGCCATTAGCCCTTGGTATTAACCCCTGTCCCACCGTGCTCAGCAGAGGTCTGCACCCTCTGAGAATACACGTGTCCTCTTTGCCTGGTTCCACACAGCTCTCCTCAGACCTCCCTGTCTTTGAAAAGTGTCGCTGTTTTCCACCCTGATTCTAACGGAACGGGGTGTTCCTTCTCGAGGTGTTTTGAGGATTAGATGGAAATATTTGGCACGGGGTAGGGAGGATTGTCCCCTGAACATCCTGGAAGTGCTGTGAGGTATCGGACTCTGTGTATGCCTCACTTCTCTCCAGTAAGGAAAGTTGCCATCGTGCACGTTTGTTGCTTTTAACTATGATTACAATTAAGTGACCGAGTCCTGATCCCTGCAGCTATAGTGAATATCTGCATGGCTTGGAACTTCTGATGGTCTGTTGCTTTCCTCCTTTCACTCTTTTCCCATTGACTTTTTAATTTTTGCCTTAGAAAGAGCCAGGGCTGTGACTAAAACGTTACAGTGTGGTTTGTGTGCGGTGATCCAGTGTGCAGGTTTGGGTTGATGTGATCTGAATTCCTTGAAGTCTCACAGCTCTCTCAACTGTCCTCTCCTCTCTACCTCCTTCTCTGTTTCAGCTTACCTTTGGGGGTCTATAGCTTCTCATTTTGGACTGGGCGTGGGGCAAGGGGTACAGAAGACAAGCCTGATAGAAGCCCAGGCATGGAAATGTAGAGCTTTGTTTCCATTTTTAAGGCTAAATGGAAAAGATCAGGAATTAGGACAGCTCTCTTTGTGACCTCATCCGTCTGGGAACGTTTGGCTGGTTGTCCAGTAGAAGCTAGCAGTAGCAGGAGTAAACATGACCTTGTACCTGTAGTGGACACTTGCAGCGAAACACTCCCCAGGGATTTGTTTGACCTGTTCCTAAAGTTCTTCCAGGCTTAAAATTACACCCTGAGGAAAAAGAGCAATGCTAGATCTGCTTGCAGCCAGTCAGGCATAGAGATGGAGGATCAACCTCGTTGATTCTGCCCAGAAGTGGCAGGATGCTCTGGGGAGCTGGCGACCTGTTAGCCAAGGTATAAGAGAGCTGGCTGCGTGGGGGACAACTGCTACTCTGGCTTCTACCGGACAGCCTGTCCAGCTCGTTTACCCTTCATCATGTTTGCCAGCGGAGAAAAATGACGTTCTTCTGGCAAAGCCCTCCTCCTCCTTGTGCCTCTGGGGCCTCCTCTGGTGCTCCTGAGGATGCCGCTCCTCCGTACAAACCCTGGGGGAGCGGTGGTGCCGAGCCAGTGCCTGGAGCTCCCCAGTTGCTGCCCTGCAGAGAAGAGAGGGGCCTTTCCCTGCTTAGAGCAGCGGCAGCAGCCACTGTAGCTAATGAGGGTTTTCTTTACATACCTGTAGCTGTTGATTACTTTTCTGTTTTGAAGTTAGTTTGTGTCTTGACGTGTCCCTTGCAATATCCCTATCGTTATATATGCTGTGTGCCTTATGAAATGCTGGGATCTGGAAAATCCAACCACCGACGCACCGTCGTCTCCACCTTTGAATGACAACCCAATCTGCCACTCGGAACTGCCCGCTGTGCGCACTTGGTCGTATGCCGTTGCGGGGGGCGGTGCGTACAG
Seq C2 exon
AGAAGCCAACAGAGCAGTAAGCGCAGCAGGAGCGTGGAAGATGACAAGGAAGGCCACCTGGTGTGCAGGATCGGCGATTGGCTTCAAGAGCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001362:ENSGALT00000002079:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=NA C2=0.406
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]