GgaEX0001548 @ galGal4
Exon Skipping
Gene
ENSGALG00000001362 | CLK3
Description
dual specificity protein kinase CLK3 [Source:RefSeq peptide;Acc:NP_001012542]
Coordinates
chr10:1978062-1980818:-
Coord C1 exon
chr10:1980605-1980818
Coord A exon
chr10:1978398-1978491
Coord C2 exon
chr10:1978062-1978128
Length
94 bp
Sequences
Splice sites
3' ss Seq
GCGGGGGGCGGTGCGTACAGAGA
3' ss Score
-1.57
5' ss Seq
GATGTACAG
5' ss Score
-3.25
Exon sequences
Seq C1 exon
CCATGACAGGATGCCTTATCACAGGAGATACAGAGACCGACGGGACAGCGACGCCTACAGATTCGAAGAGCGGAGCCCGTCCTTCGACGACGACTATTACTCGACCCGCACGCGGCACTGGCGGCGATCCCGGGACAGAGAGCAGTACTATGACAGGAAGCACCAGCACTACTGCAGGAAACGCAGGACCAGGTCTTGTAGCAGTGCCTCCTCG
Seq A exon
AGAAGCCAACAGAGCAGTAAGCGCAGCAGGAGCGTGGAAGATGACAAGGAAGGCCACCTGGTGTGCAGGATCGGCGATTGGCTTCAAGAGCGAT
Seq C2 exon
ATGAAATTGTCGGCAGCCTTGGCGAAGGCACTTTTGGCAAAGTGGTGGAGTGTGTAGACCACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001362_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.444 A=0.406 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006920=Pkinase=PU(0.1=0.0)
C2:
PF0006920=Pkinase=PU(6.9=95.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACTATTACTCGACCCGCA
R:
CACACTCCACCACTTTGCCAA
Band lengths:
179-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]