HsaEX0015700 @ hg38
Exon Skipping
Gene
ENSG00000179335 | CLK3
Description
CDC like kinase 3 [Source:HGNC Symbol;Acc:HGNC:2071]
Coordinates
chr15:74620009-74622560:+
Coord C1 exon
chr15:74620009-74620225
Coord A exon
chr15:74622120-74622216
Coord C2 exon
chr15:74622494-74622560
Length
97 bp
Sequences
Splice sites
3' ss Seq
TCGGGGGGCGGTGCATGCAGAGA
3' ss Score
-0.12
5' ss Seq
GATGTACAG
5' ss Score
-3.25
Exon sequences
Seq C1 exon
CCATGACCGCCTGCCCTACCAGAGGAGGTACCGGGAGCGCCGTGACAGCGATACATACCGGTGTGAAGAGCGGAGCCCATCCTTTGGAGAGGACTACTATGGACCTTCACGTTCTCGTCATCGTCGGCGATCGCGGGAGAGGGGGCCATACCGGACCCGCAAGCATGCCCACCACTGCCACAAACGCCGCACCAGGTCTTGTAGCAGCGCCTCCTCG
Seq A exon
AGAAGCCAACAGAGCAGTAAGCGCAGCAGCCGGAGTGTGGAAGATGACAAGGAGGGTCACCTGGTGTGCCGGATCGGCGATTGGCTCCAAGAGCGAT
Seq C2 exon
ATGAGATTGTGGGGAACCTGGGTGAAGGCACCTTTGGCAAGGTGGTGGAGTGCTTGGACCATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179335_MULTIEX4-2/3=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.762 A=0.424 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006920=Pkinase=PU(0.1=0.0)
C2:
PF0006920=Pkinase=PU(26.2=95.7)
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATGGACCTTCACGTTCTCG
R:
CACTCCACCACCTTGCCAAAG
Band lengths:
174-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development