BtaEX0009265 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007304 | CLK3
Description
Bos taurus CDC-like kinase 3 (CLK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001034248]
Coordinates
chr21:34445155-34447649:-
Coord C1 exon
chr21:34447433-34447649
Coord A exon
chr21:34445498-34445594
Coord C2 exon
chr21:34445155-34445221
Length
97 bp
Sequences
Splice sites
3' ss Seq
TCGGGGGGCGGTGCATGCAGAGA
3' ss Score
-0.12
5' ss Seq
GATGTACAG
5' ss Score
-3.25
Exon sequences
Seq C1 exon
CCATGACCGCTTGCCCTACCAGAGGAGATACCGGGAGCACCGTGACAGCGACACATACCGGTGTGAAGACCGGAGCCCATCCTTTGGGGAGGACTACTACGGATCTTCACGTTGCCATCATCGTCGGCGATCACGGGAGAGGGAGCCATACCGGACCCGCAAGCACGCCCACCACTGCCACAAACGCCGCACCAGGTCTTGTAGCAGCGCCTCCTCG
Seq A exon
AGAAGCCAACAGAGCAGTAAGCGCAGCAGCCGGAGTGTGGAAGATGACAAGGAGGGCCACCTGGTGTGCCGGATCGGCGATTGGCTCCAAGAGCGAT
Seq C2 exon
ATGAGATCGTGGGGAACCTGGGTGAAGGCACCTTTGGCAAGGTGGTGGAGTGCTTGGACCATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007304_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.753 A=0.424 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006920=Pkinase=PU(0.1=0.0)
C2:
PF0006920=Pkinase=PU(6.9=95.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATCTTCACGTTGCCATCA
R:
CACTCCACCACCTTGCCAAAG
Band lengths:
170-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development