MmuEX0011722 @ mm9
Exon Skipping
Gene
ENSMUSG00000032316 | Clk3
Description
CDC-like kinase 3 [Source:MGI Symbol;Acc:MGI:1098670]
Coordinates
chr9:57606091-57608847:-
Coord C1 exon
chr9:57608631-57608847
Coord A exon
chr9:57606434-57606530
Coord C2 exon
chr9:57606091-57606157
Length
97 bp
Sequences
Splice sites
3' ss Seq
TCGGGGGGCGGTGCATGCAGAGA
3' ss Score
-0.12
5' ss Seq
GATGTACAG
5' ss Score
-3.25
Exon sequences
Seq C1 exon
CCATGATCGTATACCCTACCAGCGGAGGTACCGGGAACACCGTGACAGTGATACGTATCGGTGTGAAGAGCGGAGCCCATCTTTTGGAGAGGACTGCTATGGGTCTTCACGTTCTCGACATCGGAGACGGTCACGAGAGAGGGCGCCGTACCGTACCCGCAAGCATGCCCACCACTGTCACAAACGCCGTACCAGGTCTTGTAGCAGTGCTTCCTCG
Seq A exon
AGAAGCCAACAGAGCAGTAAGCGCAGCAGCCGGAGTGTGGAAGATGACAAGGAGGGCCACCTGGTGTGCCGGATCGGCGATTGGCTCCAAGAGCGAT
Seq C2 exon
ATGAGATCGTGGGGAACCTGGGTGAAGGCACCTTTGGCAAGGTGGTGGAGTGCTTGGACCATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032316_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.781 A=0.424 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006920=Pkinase=PU(0.1=0.0)
C2:
PF0006920=Pkinase=PU(6.9=95.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTCTTCACGTTCTCGACA
R:
CACTCCACCACCTTGCCAAAG
Band lengths:
170-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types