GgaEX0001548 @ galGal3
Exon Skipping
Gene
ENSGALG00000001362 | Q5F445_CHICK
Description
NA
Coordinates
chr10:1858198-1860954:-
Coord C1 exon
chr10:1860741-1860954
Coord A exon
chr10:1858534-1858627
Coord C2 exon
chr10:1858198-1858264
Length
94 bp
Sequences
Splice sites
3' ss Seq
GCGGGGGGCGGTGCGTACAGAGA
3' ss Score
-1.57
5' ss Seq
GATGTACAG
5' ss Score
-3.25
Exon sequences
Seq C1 exon
CCATGACAGGATGCCTTATCACAGGAGATACAGAGACCGACGGGACAGCGACGCCTACAGATTCGAAGAGCGGAGCCCGTCCTTCGACGACGACTATTACTCGACCCGCACGCGGCACTGGCGGCGATCCCGGGACAGAGAGCAGTACTATGACAGGAAGCACCAGCACTACTGCAGGAAACGCAGGACCAGGTCTTGTAGCAGTGCCTCCTCG
Seq A exon
AGAAGCCAACAGAGCAGTAAGCGCAGCAGGAGCGTGGAAGATGACAAGGAAGGCCACCTGGTGTGCAGGATCGGCGATTGGCTTCAAGAGCGAT
Seq C2 exon
ATGAAATTGTCGGCAGCCTTGGCGAAGGCACTTTTGGCAAAGTGGTGGAGTGTGTAGACCACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001362_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.444 A=0.406 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006920=Pkinase=PU(0.1=0.0)
C2:
PF0006920=Pkinase=PU(6.9=95.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACTATTACTCGACCCGCA
R:
CACACTCCACCACTTTGCCAA
Band lengths:
179-273
Functional annotations
There are 0 annotated functions for this event