HsaINT0036437 @ hg38
Intron Retention
Gene
ENSG00000176444 | CLK2
Description
CDC like kinase 2 [Source:HGNC Symbol;Acc:HGNC:2069]
Coordinates
chr1:155268708-155269716:-
Coord C1 exon
chr1:155269488-155269716
Coord A exon
chr1:155268796-155269487
Coord C2 exon
chr1:155268708-155268795
Length
692 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CCCCCCCTGCCCCCCGACAGCAG
3' ss Score
7.45
Exon sequences
Seq C1 exon
CAGTTATGATGATCGTTCGTCCGACCGGAGGGTGTATGACCGGCGATACTGTGGCAGCTACAGACGCAACGATTATAGCCGGGATCGGGGAGATGCCTACTATGACACAGACTATCGGCATTCCTATGAATATCAGCGGGAGAACAGCAGTTACCGCAGCCAGCGCAGCAGCCGGAGGAAGCACAGACGGCGGAGGAGGCGCAGCCGGACATTTAGCCGCTCATCTTCG
Seq A exon
GTGAGTGCCAGCCCAGGCCCTTCCTCTCCCCACTCTTCTGCAGGCCCTCTAGGACTCTGGTAAGTGAGCAGTATCCTTGTTCTCAGCTGAACATTGGGGCATGAACACTGAGGTGGGCACTGAGTTTGCCTACTTTCTTGGAAGCTCTCCGACTCTTGAAGGGCCCTGGATCTGCTTTGGAGATGGATGGGCACGGAGCATTTGTGACCCCCAGTGCTCTCCCTGGCATGTTGGGCTTATTGTGTTGGGAGCAGCTTCTCCGCCCCAGCGGCCTCCACTCTTTAATGGGGACCTTGCTTGTGAACTGCCTTTTTCCCCCAAGCCCTGGGCTCTGTAGCCCCCTTGGCAGGCGGGCTTGGGTGGGGGCAAGGGGAGATCTGTGTCTGCCCGGAAGGGCATTGTGTAGAGCATGGGGTTGTGGGTGACATTGGCAACAACACCACTTCTCTGCTCTGCCCATGCCTCTCCCTGTTCCTGTTTTGGGTTTGGGGACTTGGGATTATGCGCCGCTCTCTCTTCTCACACCGATCCACCTTACTGCATCTGACGTGTTCCCTTCCACTGTCCCCCATCATCGTCTGTCCCCCCTGGCTGGGCGCCTGTGACCGGTGACCCCTCTACCACCCACCCCGCCTCCCTCCGGCCCCCGCTCCGACACCTGGCTTGCTCCGACCCCCCCTGCCCCCCGACAG
Seq C2 exon
CAGCACAGCAGCCGGAGAGCCAAGAGTGTAGAGGACGACGCTGAGGGCCACCTCATCTACCACGTCGGGGACTGGCTACAAGAGCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176444:ENST00000368361:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.803 A=NA C2=0.311
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATGATGATCGTTCGTCCGACC
R:
CTCTTGTAGCCAGTCCCCGA
Band lengths:
310-1002
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development