GgaALTA0007776-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000015538 | KIAA0232
Description
KIAA0232 [Source:HGNC Symbol;Acc:HGNC:28992]
Coordinates
chr4:79418374-79431156:+
Coord C1 exon
chr4:79418374-79421671
Coord A exon
NA
Coord C2 exon
chr4:79431075-79431156
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGT
5' ss Score
10.2
3' ss Seq
TATTGAATACTGATCTGCAGAGA
3' ss Score
3.93
Exon sequences
Seq C1 exon
GGATTTCTCCAAGGACTCACTTTCGCCCAATTTCTGCATCTGAACTTTCTCCAGGTGGTGGAAGTGAGTCAGAATTTGAATCAGAAAAGGATGAGGGAAGTATTGCTGTCCCTTCTCAAGTAGATGTGTTTGAGGATCCACAAGCAGATCTCAAACCTCTGGAAGAAGATGCAGAAAAAGAAGGGCATTATTATGGAAAATCAGAGCTCGAATCTGGAAAATTTCTTCCCAGATTAAAAAAGTCTGGAATGGAGAAGAGTGCACAAACATCATTGGATTCCCAAGAAGAGTCCACTGGGATGTTACCAGTAGGAAACCAAGATCCGTGTTTAGAATGCAGTATGAAAGAATCCCTAGATGGGAGGGTGATGGAGAGCTCTAAAGTAAACTGCAGAATAGTGGAGCCGCGAGAGGAGACTAGCAGGTTTTGCAGTTGTAAAGCAGGATGCCATTTCCCCAGTTATGAAGATAATCCTGTTTCTTCAGGAGAGCTTGAAGAG
Seq A exon
NA
Seq C2 exon
AGAATGAGTGGCAGCCAGGAAAAGCAGTGCTGGTGGGAAAAGGCGCTCTATTCTCCCCTTTTTCCTGCGTCACAGTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015538-13-12,13-11-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.317 A=NA C2=0.189
Domain overlap (PFAM):
C1:
PF153761=DUF4603=FE(85.5=100)
A:
NA
C2:
PF153761=DUF4603=PD(2.6=91.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCAGGATGCCATTTCCCC
R:
AGGGGAGAATAGAGCGCCTTT
Band lengths:
122-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]