GgaALTA0007776-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000015538 | KIAA0232
Description
KIAA0232 [Source:HGNC Symbol;Acc:HGNC:28992]
Coordinates
chr4:79418374-79431156:+
Coord C1 exon
chr4:79418374-79421671
Coord A exon
chr4:79431048-79431074
Coord C2 exon
chr4:79431075-79431156
Length
27 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGT
5' ss Score
10.2
3' ss Seq
CATGATTATTGTCTAAACAGTTT
3' ss Score
6.85
Exon sequences
Seq C1 exon
GGATTTCTCCAAGGACTCACTTTCGCCCAATTTCTGCATCTGAACTTTCTCCAGGTGGTGGAAGTGAGTCAGAATTTGAATCAGAAAAGGATGAGGGAAGTATTGCTGTCCCTTCTCAAGTAGATGTGTTTGAGGATCCACAAGCAGATCTCAAACCTCTGGAAGAAGATGCAGAAAAAGAAGGGCATTATTATGGAAAATCAGAGCTCGAATCTGGAAAATTTCTTCCCAGATTAAAAAAGTCTGGAATGGAGAAGAGTGCACAAACATCATTGGATTCCCAAGAAGAGTCCACTGGGATGTTACCAGTAGGAAACCAAGATCCGTGTTTAGAATGCAGTATGAAAGAATCCCTAGATGGGAGGGTGATGGAGAGCTCTAAAGTAAACTGCAGAATAGTGGAGCCGCGAGAGGAGACTAGCAGGTTTTGCAGTTGTAAAGCAGGATGCCATTTCCCCAGTTATGAAGATAATCCTGTTTCTTCAGGAGAGCTTGAAGAG
Seq A exon
TTTCCTGTATTGAATACTGATCTGCAG
Seq C2 exon
AGAATGAGTGGCAGCCAGGAAAAGCAGTGCTGGTGGGAAAAGGCGCTCTATTCTCCCCTTTTTCCTGCGTCACAGTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015538-13-12,13-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.317 A=NA C2=0.189
Domain overlap (PFAM):
C1:
PF153761=DUF4603=FE(85.5=100)
A:
NA
C2:
PF153761=DUF4603=PD(2.6=91.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCAGGATGCCATTTCCCC
R:
AGGGGAGAATAGAGCGCCTTT
Band lengths:
122-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]