GgaALTA0008178-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000016330 | ANGPT2
Description
NA
Coordinates
chr3:91432554-91435189:+
Coord C1 exon
chr3:91432554-91432786
Coord A exon
chr3:91435059-91435061
Coord C2 exon
chr3:91435062-91435189
Length
3 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TCTCTTTATTGCATTTTTAGCAG
3' ss Score
6.57
Exon sequences
Seq C1 exon
CTTTCTAGAAAAAAGAGTTCTTGAGATGGAAGACAAGCACACACTTCAGCTGAAGTCAATAAAAGATGAAAAAGATCAGCTTCAAGTCCTAGTAGCCAGACAGAATTCCATTATAGAAGAACTAGAAAAGCAGTTAGTTACAGCTACGGTAAACAACTCCGTTCTGCAAAAACAGCAACATGATTTGATGGAGACTGTTCACAACTTACTTACTATGATATCTACACCAAACT
Seq A exon
CAG
Seq C2 exon
CTAAGAAGAACTTCATAGCTAAAGAGGAGCAAATCAGCTTCAAAGACTGTGCTGAAGCTTTCAAATCTGGACTCACAACAAGTGGAATCTACACCTTAACATTTCCTAACTCTGCACAGGAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016330-3-5,3-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041569=IncA=FE(38.8=100),PF0497710=DivIC=PD(34.0=20.3)
A:
NA
C2:
PF041569=IncA=PD(1.5=6.8),PF0014713=Fibrinogen_C=PU(14.0=68.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGAGACTGTTCACAACTT
R:
GCTTCAGCACAGTCTTTGAAGC
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]