GgaALTA0008178-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000016330 | angiopoietin-2
Description
angiopoietin-2 [Source:RefSeq peptide;Acc:NP_990148]
Coordinates
chr3:88030443-88033078:+
Coord C1 exon
chr3:88030443-88030675
Coord A exon
chr3:88032948-88032950
Coord C2 exon
chr3:88032951-88033078
Length
3 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TCTCTTTATTGCATTTTTAGCAG
3' ss Score
6.57
Exon sequences
Seq C1 exon
CTTTCTAGAAAAAAGAGTTCTTGAGATGGAAGACAAGCACACACTTCAGCTGAAGTCAATAAAAGATGAAAAAGATCAGCTTCAAGTCCTAGTAGCCAGACAGAATTCCATTATAGAAGAACTAGAAAAGCAGTTAGTTACAGCTACGGTAAACAACTCCGTTCTGCAAAAACAGCAACATGATTTGATGGAGACTGTTCACAACTTACTTACTATGATATCTACACCAAACT
Seq A exon
CAG
Seq C2 exon
CTAAGAAGAACTTCATAGCTAAAGAGGAGCAAATCAGCTTCAAAGACTGTGCTGAAGCTTTCAAATCTGGACTCACAACAAGTGGAATCTACACCTTAACATTTCCTAACTCTGCACAGGAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016330-4-8,4-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(14.0=68.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGAGACTGTTCACAACTT
R:
GCTTCAGCACAGTCTTTGAAGC
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]