HsaALTA0000427-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000091879 | ANGPT2
Description
angiopoietin 2 [Source:HGNC Symbol;Acc:485]
Coordinates
chr8:6377385-6378931:-
Coord C1 exon
chr8:6378699-6378931
Coord A exon
chr8:6377513-6377515
Coord C2 exon
chr8:6377385-6377512
Length
3 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
GCCTTACTATTTTTTAAAAGCAG
3' ss Score
4.58
Exon sequences
Seq C1 exon
TTTCCTAGAAAAGAAGGTGCTAGCTATGGAAGACAAGCACATCATCCAACTACAGTCAATAAAAGAAGAGAAAGATCAGCTACAGGTGTTAGTATCCAAGCAAAATTCCATCATTGAAGAACTAGAAAAAAAAATAGTGACTGCCACGGTGAATAATTCAGTTCTTCAGAAGCAGCAACATGATCTCATGGAGACAGTTAATAACTTACTGACTATGATGTCCACATCAAACT
Seq A exon
CAG
Seq C2 exon
CTAAGGACCCCACTGTTGCTAAAGAAGAACAAATCAGCTTCAGAGACTGTGCTGAAGTATTCAAATCAGGACACACCACGAATGGCATCTACACGTTAACATTCCCTAATTCTACAGAAGAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000091879-4-5,4-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=NA C2=0.161
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(42.9=100),PF0497710=DivIC=PD(38.0=24.1)
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(14.0=69.8)
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTTCTTCAGAAGCAGCAACA
R:
TCTTTAGCAACAGTGGGGTCC
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)