GgaALTA1000494-1/2 @ galGal4
Alternative 3'ss
Description
NA
Coordinates
chr14:2257478-2262855:-
Coord C1 exon
chr14:2262671-2262855
Coord A exon
NA
Coord C2 exon
chr14:2257478-2257578
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
TTTGTGTTTCTGTCCCGCAGCTC
3' ss Score
11.41
Exon sequences
Seq C1 exon
AAAAGGTGCATGCAGAGATTGAGCGCGTTCTTGGCCCTGACTGCCCGCCTACCTTTGAGGACCGGAAAAACATGCCCTTCACCAACGCGGTCATCCACGAGGTGCAGAGATTTGTCACCCTTCTGCCGCATGTTCCACGGTGCACCTCTGCTGACACTCGTTTTAAAGGCTATTTCATACCCAAG
Seq A exon
NA
Seq C2 exon
CTCCCTCTAAAGAAGCTGGTCTGTAGTGCCACTGGCAGCAAGAGGAGCATGGTGTGCCCCTGGGCTGGGCTGTACCCACCTTGGGAAGGAAGTATCCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004050-11-16,11-15-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTGCATGCAGAGATTGAGC
R:
CAGGGGATACTTCCTTCCCAAG
Band lengths:
284-577
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]