GgaEX0005408 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr14:2261358-2262855:-
Coord C1 exon
chr14:2262671-2262855
Coord A exon
chr14:2262271-2262412
Coord C2 exon
chr14:2261358-2261826
Length
142 bp
Sequences
Splice sites
3' ss Seq
TGAACACAGCTGTGTTGTAGGGA
3' ss Score
1.69
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
AAAAGGTGCATGCAGAGATTGAGCGCGTTCTTGGCCCTGACTGCCCGCCTACCTTTGAGGACCGGAAAAACATGCCCTTCACCAACGCGGTCATCCACGAGGTGCAGAGATTTGTCACCCTTCTGCCGCATGTTCCACGGTGCACCTCTGCTGACACTCGTTTTAAAGGCTATTTCATACCCAAG
Seq A exon
GGAACAACAGTGATTCCTCTGCTCTCCTCGGTGCTGCTGGATAAAACACAGTGGGAGACGCCAGATGAATTCAACCCCAACCACTTTCTTGATGCAGATGGGAACTTTGTAAAGAAGAAAGCGTTCCTCCCCTTCTCCACAG
Seq C2 exon
GGCGGAGAAACTGCATTGGAGAAAGCCTTGCCACGGTGGAGCTCTTCATCTTCTTCACGGGCTTGATCCAGAAGTTCACCTTTAAGCCTCCACCCGGGGTGAAAGAATCAGAGCTGAACATGACAGCAGAGGCCGGGTTCACCATGAGGCCATCCCCGCAGTGTGCCTGTGCTGTGCTGCGCCGTGAGCCCGAGCCTCATAGTGCAGGAAAACCCACGTAGCTCACTGCGGAGCCCAGCAGATGCACACAGGAGAAACCAGAGCTCCCTATGCAGTATTTAGCAGTAAAGCCTTCTTACTCAAAGCCTTTCAAAAACTGGCTCTGTGCTTAAAATGTGTGTTGAGCAAATGGTTTTGTACGAAGCAGAGGAGAGCTGGGGCTGAGGTGAGCTGGGAATAGCACCCAACATATGATGGGGAGTGACAGAACTATCGCTACTTCACACATTAAATGCACAATGTAAGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004050-'11-14,'11-11,12-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGACCGGAAAAACATGCC
R:
GCTCTGATTCTTTCACCCCGG
Band lengths:
244-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]