GgaEX0005408 @ galGal3
Exon Skipping
Gene
ENSGALG00000004050 | F1NWE0_CHICK
Description
NA
Coordinates
chr14:2264133-2269510:-
Coord C1 exon
chr14:2269326-2269510
Coord A exon
chr14:2268926-2269067
Coord C2 exon
chr14:2264133-2264233
Length
142 bp
Sequences
Splice sites
3' ss Seq
TGAACACAGCTGTGTTGTAGGGA
3' ss Score
1.69
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
AAAAGGTGCATGCAGAGATTGAGCGCGTTCTTGGCCCTGACTGCCCGCCTACCTTTGAGGACCGGAAAAACATGCCCTTCACCAACGCGGTCATCCACGAGGTGCAGAGATTTGTCACCCTTCTGCCGCATGTTCCACGGTGCACCTCTGCTGACACTCGTTTTAAAGGCTATTTCATACCCAAG
Seq A exon
GGAACAACAGTGATTCCTCTGCTCTCCTCGGTGCTGCTGGATAAAACACAGTGGGAGACGCCAGATGAATTCAACCCCAACCACTTTCTTGATGCAGATGGGAACTTTGTAAAGAAGAAAGCGTTCCTCCCCTTCTCCACAG
Seq C2 exon
CTCCCTCTAAAGAAGCTGGTCTGTAGTGCCACTGGCAGCAAGAGGAGCATGGTGTGCCCCTGGGCTGGGCTGTACCCACCTTGGGAAGGAAGTATCCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004050-'8-10,'8-8,9-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.042 C2=NA
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.4=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATTGAGCGCGTTCTTGG
R:
GGTACAGCCCAGCCCAGG
Band lengths:
248-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]