GgaINT0016199 @ galGal4
Intron Retention
Description
NA
Coordinates
chr14:2261358-2262412:-
Coord C1 exon
chr14:2262271-2262412
Coord A exon
chr14:2261827-2262270
Coord C2 exon
chr14:2261358-2261826
Length
444 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
CTGTGCTCTTGGCATCGCAGGGC
3' ss Score
7.39
Exon sequences
Seq C1 exon
GGAACAACAGTGATTCCTCTGCTCTCCTCGGTGCTGCTGGATAAAACACAGTGGGAGACGCCAGATGAATTCAACCCCAACCACTTTCTTGATGCAGATGGGAACTTTGTAAAGAAGAAAGCGTTCCTCCCCTTCTCCACAG
Seq A exon
GTAACAGAAGGGTTTGGCCAGGCACTGGGCTGAGTGTGCAGCCAGGTGTGAGCTCTGCCAGGAGCAGCACAGGTCAGCGATGGGGATGCTGTAGCAACATTCGCTCTGGGTTTCAGTGAATTGCAAAATTCAGTCCTTAATGGGAGGTACACCAGGCCGTGGGGTTTAAAGACACCTCTGGGACTCAAGCAGGAGTTCCTCCTTCCCTCTTCCTTAGGAAGAATGGTTTCTAGGTTGTCCCAAACCAGTGCCTTGCAGGCTTGGAGTGAAGCCGCCCTGCTCAGATACGTATAGGAGACCAATGGCGATGGCTGCTGAACCTCACCCCACTATGTCTGCAGTTCTGCAGCCTGTTCTGTCCCTCACACTGTTGCTACCAAGTGGTAGGGAAGATTTCTCAAGGAAACTGCCACTCCACAAACCTCTGTGCTCTTGGCATCGCAG
Seq C2 exon
GGCGGAGAAACTGCATTGGAGAAAGCCTTGCCACGGTGGAGCTCTTCATCTTCTTCACGGGCTTGATCCAGAAGTTCACCTTTAAGCCTCCACCCGGGGTGAAAGAATCAGAGCTGAACATGACAGCAGAGGCCGGGTTCACCATGAGGCCATCCCCGCAGTGTGCCTGTGCTGTGCTGCGCCGTGAGCCCGAGCCTCATAGTGCAGGAAAACCCACGTAGCTCACTGCGGAGCCCAGCAGATGCACACAGGAGAAACCAGAGCTCCCTATGCAGTATTTAGCAGTAAAGCCTTCTTACTCAAAGCCTTTCAAAAACTGGCTCTGTGCTTAAAATGTGTGTTGAGCAAATGGTTTTGTACGAAGCAGAGGAGAGCTGGGGCTGAGGTGAGCTGGGAATAGCACCCAACATATGATGGGGAGTGACAGAACTATCGCTACTTCACACATTAAATGCACAATGTAAGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004050:ENSGALT00000006446:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCCAGATGAATTCAACCCC
R:
AGGGAGCTCTGGTTTCTCCTG
Band lengths:
354-798
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]