GgaALTA1000497-1/2 @ galGal4
Alternative 3'ss
Description
NA
Coordinates
chr20:5579335-5580567:-
Coord C1 exon
chr20:5580301-5580567
Coord A exon
NA
Coord C2 exon
chr20:5579335-5579448
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCCATCAGCGTACCCTGCAGCCA
3' ss Score
2.66
Exon sequences
Seq C1 exon
GTGATGACAGAGGGTGGCCACAGCAAAGGGTTTGGCTTTGTATGTTTTTCCTCTCCAGAAGAGGCTACCAAGGCCGTGACCGAAATGAACGGACGGATTGTTAGCACTAAGCCTCTCTACGTTGCGCTCGCGCAAAGGAAAGAGGAAAGGAAAGCAATTCTCACCAACCAGTACATGCAGCGATTGGCCACCATGAGGGCACTGCCTGGCCCTTTCCTTGGCTCCTTCCAGCCTCCCCCGGGGTATTTCCTCCCCCCCATCCCTCAG
Seq A exon
NA
Seq C2 exon
CCACACCCATCCTGAGGGCTGCTGTGCAGCCCCGGCGCCTGCTGTCCAACATCAGCACCATGAGACAGGCGTCCACCCAAGTGCCTCGTGTGCCCCCCCAGGCGCAGAGAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004123-12-12,12-11-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.101 A=NA C2=0.872
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(56.5=43.8)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCCGGGGTATTTCCTC
R:
GCCTGTCTCATGGTGCTGATG
Band lengths:
105-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]