GgaALTA1002088-3/3 @ galGal4
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C4W1]
Coordinates
chr8:25588052-25588605:-
Coord C1 exon
chr8:25588429-25588605
Coord A exon
chr8:25588174-25588184
Coord C2 exon
chr8:25588052-25588173
Length
11 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
TAACACTTCATTTTCTGAAGCCC
3' ss Score
3.72
Exon sequences
Seq C1 exon
CTGTACACATTTTTCCCCTCCATAGTAAAGTACCTCCCTGGATCCCACCAAACAGTTATCAAAAATGGGAAGCTCATGAAAGATTTTGTGTGCAATGTGATCAGCAAACATAAGGAAGATCTGAACCCCTCAGAGAGCCGGGACTTCATCGACAGCTACCTGCAGGAGATGGCCAAG
Seq A exon
CCCGACAGCAG
Seq C2 exon
TGATTTCTGTGAGGATAACCTGGTGTCGTGCACTCTTGACCTGTTTTTTGCTGGGACTGAGACCACCTCTACAACCATTCGCTGGGCCCTGCTGTTTATGGCCATGTATCCAGAAATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018634-10-13,10-12,10-11-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.8=100)
A:
NA
C2:
PF0006717=p450=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGAGCCGGGACTTCATC
R:
AACAGGTCAAGAGTGCACGAC
Band lengths:
93-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]