RnoALTA0011059-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000042224 | Cyp2j10
Description
cytochrome P450, family 2, subfamily j, polypeptide 10 [Source:RGD Symbol;Acc:1563215]
Coordinates
chr5:115084329-115087047:-
Coord C1 exon
chr5:115086871-115087047
Coord A exon
chr5:115084421-115084470
Coord C2 exon
chr5:115084329-115084420
Length
50 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
AAGCAAACTGTCTTCTCTAGTAC
3' ss Score
3.34
Exon sequences
Seq C1 exon
CTCTACAATGTCTTTCCAACCATAATTAAATATCTTCCTGGATCACATCAAACAGTTTTGAGAAACTGGGAAAAACTGAAATTGTTTATTTCCTGTATGATGGACAGTCACCAGAAAGACTGGAACCCTGACGAACCAAGAGATTTCATTGATGCTTTCCTTACAGAAATGGCAAAG
Seq A exon
TACCGAGACAAGACTACTACAAGTTTCAATAAAGAAAACCTCATCTACAG
Seq C2 exon
CACCCTGGACCTCTTCTTTGCTGGATCAGAGACAACATCTAACATACTGCGCTGGTCTCTGCTCTACATAACTACAAACCCAGAAGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042224-25-28,25-27-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAGACTGGAACCCTGACGA
R:
ATGTAGAGCAGAGACCAGCGC
Band lengths:
134-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]