GgaALTA1002732-3/3 @ galGal4
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GI47]
Coordinates
chrZ:32684512-32696928:+
Coord C1 exon
chrZ:32684512-32684700
Coord A exon
chrZ:32696755-32696766
Coord C2 exon
chrZ:32696767-32696928
Length
12 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TCTACACTACCATTTTTGAGGAA
3' ss Score
-0.18
Exon sequences
Seq C1 exon
CTCTATAATGAATTGACTTTGTGTTTTGAAACTTTAAAAACAAATGAAATTCAGCTGCAGCAAAGGTACACCTCTCTTCAGGATCAGTTACTTGGAAAAGATGAGAAGATTTGTCAGTTACAGGAACAACTTCAGCAGGCTCACGATGCTTTGAATATGTTACATCAGAATTCTTCTTGTGACTTACAG
Seq A exon
GAATTTCAGCAG
Seq C2 exon
CCTTCTTTAGGAGAGCTGGAGTGTCTTATCACCATGCAAAAATCTGAAATTGAGCTTTTAAAGGAAAAACTGAAAAAAGCAAGTCTTAACCAGGTGGAGCATAATTTGTACACTACAGATACTCTGAAAACCAGCAATTTAAGGAGTGGAAGAAAGCGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028298-12-14,12-13,12-12-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTCAGCAGGCTCACGATG
R:
TGGTGATAAGACACTCCAGCTCT
Band lengths:
96-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]