GgaEX1005001 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GI47]
Coordinates
chrZ:32684512-32707969:+
Coord C1 exon
chrZ:32684512-32684700
Coord A exon
chrZ:32702939-32703001
Coord C2 exon
chrZ:32707848-32707969
Length
63 bp
Sequences
Splice sites
3' ss Seq
GTCCTTGTTTTATTCTCCAGGAA
3' ss Score
10.75
5' ss Seq
GAAGTAAGG
5' ss Score
6.38
Exon sequences
Seq C1 exon
CTCTATAATGAATTGACTTTGTGTTTTGAAACTTTAAAAACAAATGAAATTCAGCTGCAGCAAAGGTACACCTCTCTTCAGGATCAGTTACTTGGAAAAGATGAGAAGATTTGTCAGTTACAGGAACAACTTCAGCAGGCTCACGATGCTTTGAATATGTTACATCAGAATTCTTCTTGTGACTTACAG
Seq A exon
GAACCACCTGTGAAACGTTCAAGGTCTCTGTCCCCAAAGAGCTCTTTTAGAAAGTCAGAGGAA
Seq C2 exon
ACTCAAGAAACTGATGAGCTAAGAGCAGCCCATGAAAAACGCAAAGAAAGGCTGCAGATGTTACAGACCAACTACAGTGCACTAAAAGAGCAATTAAAGCAGTGGGAAGAGGGTGATAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028298_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTCAGCAGGCTCACGATG
R:
TGGTCTGTAACATCTGCAGCC
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]