BtaEX6033377 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001847 | CNTLN
Description
centlein, centrosomal protein [Source:HGNC Symbol;Acc:HGNC:23432]
Coordinates
chr8:27089621-27101949:-
Coord C1 exon
chr8:27101785-27101949
Coord A exon
chr8:27099835-27099960
Coord C2 exon
chr8:27089621-27089742
Length
126 bp
Sequences
Splice sites
3' ss Seq
GTCCTTGTTTTATTCTCGAGGAA
3' ss Score
3.41
5' ss Seq
AAGGTGAAC
5' ss Score
5.54
Exon sequences
Seq C1 exon
CCATCTTTATCAAGCTTAGAAACCTTAATGGTCTCACAGAAGTCTGAAATTGAGTATTTACAGGAGAAACTGAAAATAGCAAATGAAAAACTGTCAGAGAACAGGTCTACCAACAAGGGTTCCTCAGAGAAGAGCATCTTGACAAGTACTGAAGGGAAACGTAAG
Seq A exon
GAACCACCTGTGAAACGTTCAAGGTCTTTGTCCCCAAAGAGCTCTTTCGCAGACTCAGAGGAACTTAAGAAGCTGAGAAAAGCTGAAAGAAGGATTGAAAACTTAGAGAAGGCACTACAACTAAAG
Seq C2 exon
AACCAAGAAAATGATGAGCTAAGAGATGCCCATGAAAAACGCAAAGAAAGGCTACAGATGTTACAGACCAACTACAGAGCAGTAAAAGAGCAATTAAAACAGTGGGAAGAAGGCAGTGGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001847-'25-30,'25-29,26-30=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.655 A=0.833 C2=0.756
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCTCACAGAAGTCTGAAATTGA
R:
CACTGCCTTCTTCCCACTGTT
Band lengths:
255-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]