DreEX0022602 @ danRer10
Exon Skipping
Gene
ENSDARG00000033345 | cntln
Description
centlein, centrosomal protein [Source:ZFIN;Acc:ZDB-GENE-090313-409]
Coordinates
chr1:26241251-26298240:-
Coord C1 exon
chr1:26298076-26298240
Coord A exon
chr1:26260174-26260263
Coord C2 exon
chr1:26241251-26241372
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTCTGTTTTCATCAGGAC
3' ss Score
11.02
5' ss Seq
AAGGTGAAC
5' ss Score
5.54
Exon sequences
Seq C1 exon
CTCTACAGCGAGCTGAGCGTGTCATACCAGGCCCTTTGGCACAGCCAGGAACAGCTCCACCAGCGGGAAGCAGCCCTCAGCATGCAGCTCAGCCAGAGAGATCAGCAGATCCAAGAACTCCAGGCACAGCTGCAGAGTTTCACAGCAGCCGCGGGGCACTGTGAG
Seq A exon
GACTCTGGGTCTCCAGGTGGCAGCAGCAGTGACGGAGCTGACAGTCTGGAGAAAAGGATTCAGCAACTGCAGGAATTACTCGCTTTTAAG
Seq C2 exon
ACTCAGGAGAATGAGGATCTTCGGAAAGCCCATGCCAAACATCATGATCGTTTACGCGTTATTCAGACCAACTACAAAACAGTGACAGAGCGACTGAAAGAAGCTGAAGATACTCATGACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033345-'12-12,'12-11,15-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.236 A=0.533 C2=0.585
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCATACCAGGCCCTTTGG
R:
TGGGCTTTCCGAAGATCCTCA
Band lengths:
179-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]