MmuEX0011967 @ mm9
Exon Skipping
Gene
ENSMUSG00000038070 | Cntln
Description
centlein, centrosomal protein [Source:MGI Symbol;Acc:MGI:2443104]
Coordinates
chr4:84640533-84650948:+
Coord C1 exon
chr4:84640533-84640685
Coord A exon
chr4:84642359-84642484
Coord C2 exon
chr4:84650827-84650948
Length
126 bp
Sequences
Splice sites
3' ss Seq
GTCCTTGTTTTATTCTCGAGGAA
3' ss Score
3.41
5' ss Seq
AAGGTGAAC
5' ss Score
5.54
Exon sequences
Seq C1 exon
GCACCGTTATCAACCTTGGAAACATTGATGATCTCACAGAAGTCTGAAATTGAATATTTACAGAAGAAACTGAAAGTGGCAAACGAAAAGTTGATGGCGAATAGATCTTGTGACCAGGATTTCTCAGAGAAGGGGACTGAAGGAAAACACAAG
Seq A exon
GAACCACCTGTGAAACGCTCAAGGTCTTTGTCCCCAAAGAGCAGTTTCATGGGCTCCGAGGAGCTAAGGAAGCTTAAAAAGGCTGAAAGAAAGATTGAAAACTTGGAGAAGACGCTACAGCTAAAG
Seq C2 exon
AGCCAAGAAAATGATGAGCTAAGAGATGCCCATGAAAAACGCAAGGAGAGACTACAGATGTTACACACCAACTACAGGGCAGTAAAAGAGCAATTAAAACAGTGGGAAGAAGACAGTGGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038070-'11-13,'11-11,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.510 A=0.952 C2=0.902
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCGTTATCAACCTTGGAA
R:
TGCTCTTTTACTGCCCTGTAGT
Band lengths:
245-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: