HsaEX6060777 @ hg19
Exon Skipping
Gene
ENSG00000044459 | CNTLN
Description
centlein, centrosomal protein [Source:HGNC Symbol;Acc:23432]
Coordinates
chr9:17330630-17340946:+
Coord C1 exon
chr9:17330630-17330806
Coord A exon
chr9:17332603-17332728
Coord C2 exon
chr9:17340825-17340946
Length
126 bp
Sequences
Splice sites
3' ss Seq
GTCCTTGTTTTATTCTCGAGGAA
3' ss Score
3.41
5' ss Seq
AAGGTGAAC
5' ss Score
5.54
Exon sequences
Seq C1 exon
GTACCTCATCGCCCATCCTTATCAAGCTTAGAAACGTTAATGGTTTCACAGAAGTCTGAAATTGAGTATTTACAGGAGAAACTAAAGATAGCAAATGAAAAACTGTCAGAAAACATATCTGCCAACAAGGGTTTCTCCCGAAAGAGCATCATGACAAGTGCTGAAGGAAAACATAAG
Seq A exon
GAACCACCTGTGAAACGTTCAAGGTCTTTGTCCCCAAAGAGCTCTTTCACAGACTCAGAAGAGCTACAGAAGCTGAGAAAAGCTGAAAGAAAGATTGAAAACTTAGAGAAGGCACTACAACTAAAG
Seq C2 exon
AGCCAAGAAAATGATGAGCTAAGAGATGCCCATGAAAAACGCAAGGAACGGCTACAGATGTTACAGACCAACTACAGAGCAGTAAAAGAGCAATTAAAACAGTGGGAAGAAGGCAGTGGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000044459-'17-17,'17-15,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.587 A=0.810 C2=0.639
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCATCGCCCATCCTTATCA
R:
TGGTCTGTAACATCTGTAGCCG
Band lengths:
245-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)