GgaEX1005000 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GI47]
Coordinates
chrZ:32684512-32703001:+
Coord C1 exon
chrZ:32684512-32684700
Coord A exon
chrZ:32696764-32696928
Coord C2 exon
chrZ:32702939-32703001
Length
165 bp
Sequences
Splice sites
3' ss Seq
CCATTTTTGAGGAATTTCAGCAG
3' ss Score
-3.24
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
CTCTATAATGAATTGACTTTGTGTTTTGAAACTTTAAAAACAAATGAAATTCAGCTGCAGCAAAGGTACACCTCTCTTCAGGATCAGTTACTTGGAAAAGATGAGAAGATTTGTCAGTTACAGGAACAACTTCAGCAGGCTCACGATGCTTTGAATATGTTACATCAGAATTCTTCTTGTGACTTACAG
Seq A exon
CAGCCTTCTTTAGGAGAGCTGGAGTGTCTTATCACCATGCAAAAATCTGAAATTGAGCTTTTAAAGGAAAAACTGAAAAAAGCAAGTCTTAACCAGGTGGAGCATAATTTGTACACTACAGATACTCTGAAAACCAGCAATTTAAGGAGTGGAAGAAAGCGTGAG
Seq C2 exon
GAACCACCTGTGAAACGTTCAAGGTCTCTGTCCCCAAAGAGCTCTTTTAGAAAGTCAGAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028298_MULTIEX2-1/2=C1-2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATTGACTTTGTGTTTTGAAACTT
R:
TCCTCTGACTTTCTAAAAGAGCTCT
Band lengths:
243-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]