GgaALTA1007877-3/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000026291 | CDH3
Description
cadherin 3, type 1, P-cadherin (placental) [Source:HGNC Symbol;Acc:HGNC:1762]
Coordinates
chr11:18314463-18314957:+
Coord C1 exon
chr11:18314463-18314648
Coord A exon
chr11:18314725-18314799
Coord C2 exon
chr11:18314800-18314957
Length
75 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCTC
5' ss Score
3.68
3' ss Seq
CATCCTGTCCCCTCCCACAGGGT
3' ss Score
12.32
Exon sequences
Seq C1 exon
TATGAGGCGGCTGTGCCAGAGAATGAGGCCGAGCTGGAGGTGGCCCGGTTGGCCACCACGGACCTGGATGAGCCGCACACACCAGCGTGGCGTGCCGTCTACTCCATCGTGCGTGGCAATGAGGGCGGTGCCTTCACCATCACCACTGACCCTGCCAGCAACGAGGGCGTCCTGCGCACGGCCAAG
Seq A exon
GGTCTGGACTACGAGGCCAAGCGGCAGTTCGTGCTCCACGTGGCCGTGGTCAATGAAGCTCCCTTCGCCATCAAG
Seq C2 exon
CTGCCCACAGCCACGGCCACGGTGATGGTCAGTGTGGAGGATGTGAATGAGGCGCCCGTCTTCGACCCGCCGCTGCGGCTGGCCCAGGTGCCGGAGGACGTGCCGCTGGGGCAGCCCCTCGCCTCCTATACAGCACAGGACCCTGACAGGGCCCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026291-15-15,15-14,15-13-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.532 A=NA C2=0.256
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PU(61.0=98.4)
A:
NA
C2:
PF0002812=Cadherin=PD(37.0=45.1),PF0002812=Cadherin=PU(32.6=37.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGCCGCACACACCAG
R:
CGCCTCATTCACATCCTCCAC
Band lengths:
174-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]